PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen07g032080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 583aa MW: 65004.5 Da PI: 6.6265 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 415.5 | 4.6e-127 | 214 | 582 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 elL++cA+a+++++l ++l+a+ + +s +gdp+qRl ay++e+L ar s++++y+al+++e + + l+++++++e++P+lkf+ Sopen07g032080.1 214 NELLIACARALAENNLDDFEKLIAKARSAVSITGDPIQRLGAYIVEGLVARKEASGTNIYRALRCKEPA---GRDLLSYMHILYEICPYLKFG 303 689*****************************************************************9...9******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 +++aN aI +a +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+ + + l +g++La + e++++p+ef++ v Sopen07g032080.1 304 YMAANGAIADACRNENRIHIIDFQIAQGTQWMTLLQALAARPSGAPYVRITGIDDPVSKyaRGDGLAVVGKKLAAISEKFNIPVEFHA-VPVF 395 ********************************************************999999**************************.6888 PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 +++ ++L+v+pgEalaVn+ l lh+++desv+++++rde+L++vks sPkvv++veqe+++n+++F+ rf eal+yysa+f+s++++l r+ Sopen07g032080.1 396 APEVTRDMLNVRPGEALAVNFPLTLHHTPDESVDVTNPRDELLRMVKSFSPKVVTLVEQESNTNTAPFFPRFQEALDYYSAMFESIDVTLERD 488 999****************************************************************************************** PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 +eri+vE+++l+r+ivnv+aceg er+erhe l+kW+ r+++aGF+++pls+++++ +k+l+r ++ + y++ e++g+++lgWk+r+L+s+S Sopen07g032080.1 489 RKERINVEQHCLARDIVNVIACEGMERVERHELLGKWKLRFTMAGFHQYPLSSYVNSVIKSLMRCYS-EHYTLVEKDGAMLLGWKKRNLISAS 580 **************************************************************99888.66*********************** PP GRAS 372 aW 373 aW Sopen07g032080.1 581 AW 582 ** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.966 | 187 | 564 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-124 | 214 | 582 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
MESHNLYGYG ATDVNLPYSY SMTTTPSIPN RLLGTLKFDS GNSPNSPFAN YNDPGTPTTL 60 SDSLEQHSST ENISGTSPCS NSSRDYNHYF CRPSPSPDFR HNNLLVYSGD NSLLQYANHS 120 HNMKHALLQL ETALMGPEEV TTSSPSAGEI QQPQASGGQR SGMWHQDGQV PYRIETQPSH 180 VSVFGISGNI IQSEKHHKPM VDYPLQGIPF GNLNELLIAC ARALAENNLD DFEKLIAKAR 240 SAVSITGDPI QRLGAYIVEG LVARKEASGT NIYRALRCKE PAGRDLLSYM HILYEICPYL 300 KFGYMAANGA IADACRNENR IHIIDFQIAQ GTQWMTLLQA LAARPSGAPY VRITGIDDPV 360 SKYARGDGLA VVGKKLAAIS EKFNIPVEFH AVPVFAPEVT RDMLNVRPGE ALAVNFPLTL 420 HHTPDESVDV TNPRDELLRM VKSFSPKVVT LVEQESNTNT APFFPRFQEA LDYYSAMFES 480 IDVTLERDRK ERINVEQHCL ARDIVNVIAC EGMERVERHE LLGKWKLRFT MAGFHQYPLS 540 SYVNSVIKSL MRCYSEHYTL VEKDGAMLLG WKKRNLISAS AWH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-63 | 217 | 583 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015080715.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q69VG1 | 0.0 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | Q00LP6 | 0.0 | Q00LP6_SOLLC; GRAS2 | ||||
STRING | Solyc07g063940.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3441 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 1e-180 | GRAS family protein |
Publications ? help Back to Top | |||
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