PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g031950.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 167aa    MW: 19991.2 Da    PI: 4.9061
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g031950.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57336.61.2e-11711551297
            DUF573  12 eivlLqGlidfkaktgkspsddidafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                        +++L+ + d+k+ktg  p+    ++ +f+  si ++k+s++ l +Ki  + + +++ ++   +g++p ++++ d++if+ls ++Wg
  Sopen07g031950.1  71 SLAILRSMWDYKSKTGDFPYPPSIELLNFIMYSIpNMKISREKLAKKITTFENNYNDAWEL--DGDNPGLDRPVDREIFNLSTRLWG 155
                       589******************99999999998884689***********************..***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF057958.3E-715134IPR008780Plasmodium vivax Vir
PfamPF045041.5E-871155IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MLHENDRKKL RIDEKEESDE TGEGKTEELD PNAEEKERRR RAVKKGKQPM SKEGRQSDAD  60
YYDYDYDYNQ SLAILRSMWD YKSKTGDFPY PPSIELLNFI MYSIPNMKIS REKLAKKITT  120
FENNYNDAWE LDGDNPGLDR PVDREIFNLS TRLWGDHKGF YDDWKWK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630430.13e-27PREDICTED: ABC transporter F family member 4-like
RefseqXP_015160872.12e-29PREDICTED: endochitinase 1-like
TrEMBLA0A3Q7HF054e-83A0A3Q7HF05_SOLLC; Uncharacterized protein
STRINGSolyc07g063840.1.16e-84(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1552367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25650.12e-08DNA-binding storekeeper protein-related transcriptional regulator