PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen07g031010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 174aa MW: 20300.1 Da PI: 8.296 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.6 | 2.2e-18 | 17 | 71 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ ++++eq++ Le+ F ++++++ e++ +L+++lg++ rq+++W+qNrRa++k+ Sopen07g031010.1 17 NKKRLNQEQVKLLEASFDSTKKLDLEKKLQLSRELGVPPRQISIWYQNRRARWKN 71 56789************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 99 | 4.5e-32 | 17 | 108 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rl++eqvklLE sF++++kL+ e+K +l+reLg+ prq+ +W+qnrRAR+k++ +E+dy+aL+ ++++ +e+ +Leke++ L+ el++ Sopen07g031010.1 17 NKKRLNQEQVKLLEASFDSTKKLDLEKKLQLSRELGVPPRQISIWYQNRRARWKNQSMENDYNALQLKLENALSEKMQLEKETKILQGELEK 108 79*************************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.115 | 12 | 72 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.57E-17 | 13 | 81 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.3E-17 | 14 | 76 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.17E-14 | 15 | 73 | No hit | No description |
Pfam | PF00046 | 8.7E-16 | 17 | 71 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-19 | 19 | 79 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 47 | 70 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MNSSFNSQNL QKYSKHNKKR LNQEQVKLLE ASFDSTKKLD LEKKLQLSRE LGVPPRQISI 60 WYQNRRARWK NQSMENDYNA LQLKLENALS EKMQLEKETK ILQGELEKAN EMLIGLKSGA 120 QGQIREFTLS TCCEDLISYS TTTWVPNDEV NYSNLQFDEL YAMIGMSNKC CSTW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791458.1 | 5e-72 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
Refseq | XP_016444534.1 | 5e-72 | PREDICTED: homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A3Q7HHD8 | 1e-122 | A0A3Q7HHD8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g062790.1.1 | 1e-122 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2715 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 1e-30 | homeobox protein 52 |