PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen07g030910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 399aa MW: 43333.7 Da PI: 6.7668 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.5 | 1.4e-35 | 28 | 153 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec....eaessss 80 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++ s a ++ e+e+ ++ Sopen07g030910.1 28 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELpawkptigtaS---AAAAninlEQEQAQK 117 79**************************************************************88888775321...212223222222222 PP TCP 81 sasnsssg.............................k 89 +++ ++ Sopen07g030910.1 118 QQE--DNNfafqqgnvslfdnvagpsskramesntasF 153 222..222345555566665544444444444444440 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.5E-32 | 28 | 234 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.543 | 30 | 88 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MAETSRLGIR NTVGEIVEVQ GGHIVRSTGR KDRHSKVCTA KGPRDRRVRL SAHTAIQFYD 60 VQDRLGYDRP SKAVDWLIKK AKPAIDELAE LPAWKPTIGT ASAAAANINL EQEQAQKQQE 120 DNNFAFQQGN VSLFDNVAGP SSKRAMESNT ASFLPPSLES DAIADTIKSF FPMGSSTSAN 180 SSAMQFHSFQ EPHMLSRANS QNQDLSLSLQ FQDPIMLHHQ NQQTQHHNQT NHREQEQVQV 240 QAPAHFGGNT PHGFDTSGWS MHQRLGSWSD SREIGPGGSG GAVTGPGGYL FNSPPAPALL 300 QQLFGQNQFF SQRGPLQSSN TSSVRAWIDP SAIAIASGDP SNHHQAALPM YPSTIPGYGF 360 ASEVGGFSGF RIPARIQGEE EEHDGISDKP SSASSDSRH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-20 | 35 | 88 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-20 | 35 | 88 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015082617.1 | 0.0 | transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 3e-99 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | M1AX46 | 0.0 | M1AX46_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400032269 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3207 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 6e-89 | TCP family protein |