PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen07g030440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | DBB | ||||||||
Protein Properties | Length: 298aa MW: 32148 Da PI: 4.6148 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 17.6 | 8.2e-06 | 4 | 47 | 5 | 42 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC +C ++ H H++vpl Sopen07g030440.1 4 QCNVCEVAEANVLCCADEAALCWSCDEKVHAAnklaskHQRVPL 47 7*****999*********************66899999999986 PP | |||||||
2 | zf-B_box | 28.1 | 4.1e-09 | 53 | 90 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 ++++C+ ++e +fC +++ llC++C ++H H Sopen07g030440.1 53 SMPMCDICQETVGYFFCLEDRALLCRKCDIAIHTAnpH 90 689********9*********************55663 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.594 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.32E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 2.8E-10 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.314 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.9E-15 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.0E-6 | 53 | 89 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.08E-9 | 55 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0009658 | Biological Process | chloroplast organization | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MKIQCNVCEV AEANVLCCAD EAALCWSCDE KVHAANKLAS KHQRVPLSGS SSSMPMCDIC 60 QETVGYFFCL EDRALLCRKC DIAIHTANPH VAAHQRFLLT GVKVGLEPVD PGGISSTGTS 120 QSIQKVSEPE SAPLSKRNVP VSLDVQFNKV LPTQVSGVED FAPTKSLFAG GSAAGSMPQW 180 QFDEFIGLSD FNQNYGYMDD GSSKADNGKL GGESDSSSIL RVEDEELDGD ECLGQVPDTS 240 WAVPQVPSPP TASGLYWPKT YQNPFDSAVF VPDISYSPSS SLQQQPPSGT RLKRRRQC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:18182030}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015080285.1 | 0.0 | B-box zinc finger protein 22 isoform X2 | ||||
Swissprot | Q9SYM2 | 1e-101 | BBX22_ARATH; B-box zinc finger protein 22 | ||||
TrEMBL | A0A3Q7HE67 | 0.0 | A0A3Q7HE67_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g062160.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2892 | 23 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 4e-93 | light-regulated zinc finger protein 1 |