PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen07g029640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 322aa MW: 36616.9 Da PI: 6.448 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.4 | 1.5e-33 | 184 | 241 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCts++C+vkk+vers edp++v++tYeg+Hnh+ Sopen07g029640.1 184 EDGYRWRKYGQKAVKNSPFPRSYYRCTSQKCSVKKRVERSYEDPSIVITTYEGQHNHH 241 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.5E-35 | 168 | 243 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-29 | 175 | 243 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.961 | 178 | 243 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-39 | 183 | 242 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-26 | 184 | 241 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 322 aa Download sequence Send to blast |
MSDNNPFNHD YAFPFFGENP SIYGNQANNT QNPHHNHHDF DYSSSYMSNL TECLHGGSMD 60 HYNTLSSAFG MNNCSSSSEV VCPQPSIDHH QECSRKNINS VDNQIPLTPN SLISSSSNSE 120 AGGCHEEDSS KIKKDDDQCE LDGDDDDDDN KSKKVGKLAK KKGEKKQKEP RFAFMTKSEI 180 DNLEDGYRWR KYGQKAVKNS PFPRSYYRCT SQKCSVKKRV ERSYEDPSIV ITTYEGQHNH 240 HCPATLRGNA AAALLSPSFL SSTQQQLYHN PNEQQIFYNP NIPINNSFYN NNYHQQQPQL 300 GPDYQYGLFQ DMVASLINKR EP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 176 | 244 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 176 | 244 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC170036 | 0.0 | KC170036.1 Solanum lycopersicum WRKY16 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015080936.1 | 0.0 | WRKY transcription factor 71-like | ||||
Swissprot | Q8VWJ2 | 8e-53 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | K4CGG1 | 0.0 | K4CGG1_SOLLC; WRKY16 protein | ||||
STRING | Solyc07g056280.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1485 | 24 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G29860.1 | 8e-46 | WRKY DNA-binding protein 71 |
Publications ? help Back to Top | |||
---|---|---|---|
|