PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g028750.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 333aa    MW: 38220.9 Da    PI: 6.0453
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g028750.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.5e-191461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd +l+++++++G+g+W+t ++  g+ R++k+c++rw +yl
  Sopen07g028750.1 14 KGPWTPEEDNKLIQYIQLHGPGNWRTLPKNAGLQRCGKSCRLRWTNYL 61
                      79********************************************97 PP
2Myb_DNA-binding51.91.8e-1667111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rgr++ +E+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  Sopen07g028750.1  67 RGRFSFDEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.0E-27564IPR009057Homeodomain-like
PROSITE profilePS5129426.653965IPR017930Myb domain
SuperFamilySSF466894.12E-3111108IPR009057Homeodomain-like
SMARTSM007173.6E-151363IPR001005SANT/Myb domain
PfamPF002492.3E-171461IPR001005SANT/Myb domain
CDDcd001679.64E-131661No hitNo description
Gene3DG3DSA:1.10.10.607.9E-2665116IPR009057Homeodomain-like
PROSITE profilePS5129419.75266116IPR017930Myb domain
SMARTSM007171.9E-1566114IPR001005SANT/Myb domain
PfamPF002496.5E-1567111IPR001005SANT/Myb domain
CDDcd001674.32E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRSPCCDKN GLKKGPWTPE EDNKLIQYIQ LHGPGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFDEEETIIQ LHSVLGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRNG  120
IDPVTHSPRL DLLDLSSLLN STQFNLSSLL GLQALINPEV FRLAATLLAS QNEITPELLL  180
QKYQENNQMF NSQLQNQEGS ELLLQKLQQN QILNSQLQNQ TQFFQFQNQI QETPNFTTQN  240
VPCSSSLSQP MQLRHVEESY LMNGQMLPPQ NYGYCNSDAS DNSNFQSLNN NSSNQNISLD  300
SVLSTPTEDE KESYCSNLMK FEIPESLNFD DFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-29121162105C-Myb DNA-Binding Domain
1msf_C1e-29121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081809.10.0transcription factor MYB41-like
SwissprotQ9LDR81e-104MY102_ARATH; Transcription factor MYB102
TrEMBLM1BKB20.0M1BKB2_SOLTU; Uncharacterized protein
STRINGSolyc07g054840.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.13e-90myb domain protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]