PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g028530.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 642aa    MW: 73322.4 Da    PI: 9.968
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g028530.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3438.2e-1429116598
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                        + ++v+  ++l+lp kf++ehg +     t+++  ++   W v l  +k +++++l +GW+eF + + ++   f++Fk+ ++s+f  +v++f
  Sopen07g028530.1  29 IVEPSVMDDRQLRLPDKFVQEHGDE--LLDTVKIIVPTDDFWCVGL--KKAGKMIWLHDGWQEFMEHHSVNCWYFLLFKYGQTSCF--NVHIF 115
                       567899999*************865..6679***************..********************************999***..99998 PP

                       - CS
                B3  98 r 98 
                       +
  Sopen07g028530.1 116 D 116
                       7 PP
2B367.12.4e-21303394296
                       EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                       +++l + +v ++ +l +p +f+++++ k  +s  + l+d++g++W+v++   +++ r++l+kGW +Fv +n L +gD++vF+l ++ +  el 
  Sopen07g028530.1 303 LQILEKYNVERNYILNIPVEFVRKYMPK--TSELIELQDTDGNKWKVRC--IRRKLRVLLSKGWLNFVTDNSLLVGDVCVFELLKDvQAVELI 391
                       55666667888999***********855..5679***************..888899*************************99887777776 PP

                       EEE CS
                B3  94 vkv 96 
                       +kv
  Sopen07g028530.1 392 LKV 394
                       665 PP
3B355.78.7e-18545629996
                       HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                       +v ++ +l +p +f ++++ k  +s  ++l++++g +W+  +   +++  ++l+kGW +Fv++n L  gD +vF+l++  +  el++kv
  Sopen07g028530.1 545 HVVRNYILNIPPDFSRDYMPK--TSELIKLQNSDGSKWTAHC--VRRKTCMFLSKGWVHFVRDNSLVLGDACVFELIKGiQADELMLKV 629
                       7888999***********855..6679***************..555555689**********************99766666655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.02E-1624116IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-1625116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.43325118IPR003340B3 DNA binding domain
SMARTSM010191.2E-826118IPR003340B3 DNA binding domain
PfamPF023621.4E-1028116IPR003340B3 DNA binding domain
CDDcd100172.26E-1228116No hitNo description
Gene3DG3DSA:2.40.330.101.1E-27295398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-25297398IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-22300398No hitNo description
SMARTSM010198.3E-17302400IPR003340B3 DNA binding domain
PROSITE profilePS5086315.397302400IPR003340B3 DNA binding domain
PfamPF023622.1E-18304394IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-24529635IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-25530634IPR015300DNA-binding pseudobarrel domain
CDDcd100173.69E-21535633No hitNo description
SMARTSM010199.9E-14537635IPR003340B3 DNA binding domain
PROSITE profilePS5086314.734537635IPR003340B3 DNA binding domain
PfamPF023623.1E-16544633IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MANRKSVSAC GVMMESCSNS YSAGSFYVIV EPSVMDDRQL RLPDKFVQEH GDELLDTVKI  60
IVPTDDFWCV GLKKAGKMIW LHDGWQEFME HHSVNCWYFL LFKYGQTSCF NVHIFDLAAT  120
EIDYQLRSHG NAKSRDVAQE LSHRKDKIVG DKGFTSSIEI VDLLETEQGP ESSAKSSELL  180
HRAKRRKIAS GKIKITRCYE TRSRTNKLHD NGQLLNAKNL NISGNGSLTK PVGGKSVRRS  240
IKTPIHSAMA TGDTRKSFTS KQREKSLGRG RYDRRERAQQ KVSETSRAIQ TAKMFVPENP  300
YFLQILEKYN VERNYILNIP VEFVRKYMPK TSELIELQDT DGNKWKVRCI RRKLRVLLSK  360
GWLNFVTDNS LLVGDVCVFE LLKDVQAVEL ILKVHMFRNR VEENSKNLHT GSLSEPTLST  420
GKNCILQFDE SKHTKSSDAF EPFSSDRTNH KTDTENSFGQ QQEKSVVHGS SGNRRKRGRP  480
RVAEANTDTE NSSGQQEEKS VVHGSSGNRR KGRRLRDAKA NRATTAAKMF TPENPYFMIT  540
LGEYHVVRNY ILNIPPDFSR DYMPKTSELI KLQNSDGSKW TAHCVRRKTC MFLSKGWVHF  600
VRDNSLVLGD ACVFELIKGI QADELMLKVH IFRNKVEQNS IN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-1928463319141B3 domain-containing transcription factor VRN1
4i1k_B8e-1928463319141B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774064.10.0B3 domain-containing transcription factor VRN1-like isoform X1
TrEMBLA0A3Q7HCR60.0A0A3Q7HCR6_SOLLC; Uncharacterized protein
STRINGSolyc07g054630.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-46B3 family protein