PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen07g027560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 1782aa MW: 201205 Da PI: 5.4057 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.5 | 4.7e-18 | 46 | 100 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ + yps++ r+eL+ klgL++rq ++WF+ rR k++k Sopen07g027560.1 46 KRKMKTASQLEILEKTYATDTYPSEALRAELSVKLGLSDRQLQMWFCHRRLKDRK 100 89999************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.6E-17 | 29 | 100 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.1E-15 | 38 | 100 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.439 | 41 | 101 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.3E-17 | 43 | 105 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.00E-13 | 44 | 100 | No hit | No description |
Pfam | PF00046 | 1.2E-15 | 46 | 100 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 17.031 | 579 | 638 | IPR018501 | DDT domain |
SMART | SM00571 | 1.7E-23 | 579 | 638 | IPR018501 | DDT domain |
Pfam | PF02791 | 4.6E-19 | 580 | 635 | IPR018501 | DDT domain |
Pfam | PF05066 | 6.4E-15 | 759 | 826 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 1.8E-8 | 967 | 1009 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 5.3E-12 | 1148 | 1220 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1782 aa Download sequence Send to blast |
MESDGGGNGE ADVPMAVAAA ATSDAGVNGS CDAGKKKVPE GEPKVKRKMK TASQLEILEK 60 TYATDTYPSE ALRAELSVKL GLSDRQLQMW FCHRRLKDRK ATPVKRQKKE EVSPAAMISS 120 GGQGDEMAVS GEIGKDHVSG SGSRVSPIGL MDLQVQQQLH QRVVHRPGTA VPRFRPEMPA 180 LKRYYEPPQA ISELRAIAFV EAQLGEPLRE DGPILGMEFD PLPPGAFGAP IVAAMQHKPA 240 GRPFEAQIYE RPDVNAIKGT TRTLREYQFL PEQPSNRSDS YEQSVPSHHY RSTEVQSTRA 300 ILSTGRSFMH GSEQVASGCS IPGLIPTLNL LPQGRQGHIS PASAEAEAVP QRSLVNIEVE 360 ASYSGQPMMA LESPYMSSDK RVIHDEERLE RKRKSEEARI AREVEAHEKR IRKELEKQDM 420 LQRKREEQMR KDMERQDRER RKEEERLLRE KLREEERYQR EQRREMERRQ KFLQKESMKA 480 ERMRLKEEMR REKEVARLKA ANVRANARRI AKESTELIED ERLELMELAA SKKGSPSTLS 540 LDSETLQNLE AFRDLLNEFP PKSVCLRKPF EVEPWTCSEE DVGNLFMVWR FLITFSDVLH 600 LWPFTLDEFV QAFHDYDPRL LAEIHIALLK LIIKDIEDVA RTPASAVGAN PNANPGGGHP 660 DIVEGAYAWG FDIRSWQSHL NALTWPEILR QFALSAGFGP KLKKQSVEPA YPRDENECNN 720 GADIISNLRS GVAAEKAVAK MQERGFSNLR RSRHRLTPGT VKFAAFHVLS LEGSKGLNIL 780 DVAEKIQKSG LRDLRTSKTP EASISAALSR DTKLFERTAP STYCVRDPYR KDPGDADAIL 840 SAAREKIRMF KNEYVNGEET EDVEKEVERD DESESDAADD PEVDDLVSEL KFAETPETQK 900 IDRTDGRSSS FDLTQTPEDL SMQNSTAIMH SVNFGELKAT SGDQSTASGV EAGNLDQEDT 960 VIDENNAGQR WVQGLMEGEY SDLTVEERLH ALVALIGIAN EGNSVRLILE ERLEAASALK 1020 KQIWAEAQLD KRRFKEEFLL KVQYPSVRSN TEQLCSVTSM EARQSPLHAV GHNEVADIPS 1080 LQQEAMHKLP DEPNNPSNVA VEKTCQMQET YGGQDNSQPQ HFAYVAEKSR SQLKAYIGHR 1140 AEETFVYRSL PLGQDRRRNR YWQFITSPSR NDPGSGRIFV ELRDGRWRLI DSEKDFNCLM 1200 ASLDIRGIRE SHLHSMLQNI EATFKVTARK HKYTEVKLDD SVKEHTSETV PSIDYCSNTG 1260 GSKSTICISN QETSEPSTSF LLGFGRNKME DSDALRRYAD LEKWMWEECV HPQFLCARKY 1320 GRMRCENLIS TCNNCHDTYF LEDKHCPSCH RTFSPTKSSY FLEHVAQCKE KLEDLFWPLC 1380 IMDSLPPLRV RLLRAQLASV EACIPPEALQ PVWSELYRRS WGTKLHIASA AGDLLQILTL 1440 LEGAIKREYL ISNYETTNEL LGAVSNSNLD GMVAVLPWVP HTTSAVALRL MELDCSLCYT 1500 QPQKAESLKD EESADFTMFK TNYAQVKRAT RVISAEAREY EKLEPDYSVK VGSGHANSGQ 1560 GRNRVRGGAH CRVRGGKSQR KVNASRSDSA QRSSTKNSDR LGHLPAWKGR DRGKGRRKRG 1620 RRSVRNRQKP VKNVEEVSPE EVPTTSQQDW NDVEDEETPQ FEAPDNDSDS GTSGSEDYKC 1680 QTTVNDYEDL VVADYGSFSG RNDHASTSVS YNISQRYTET AEDGIGEYED DHDEEDEEDG 1740 LANKNVQRYF DGESDDDGDR FMDEDLVETP NKDSESSSEY SD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015081778.1 | 0.0 | homeobox-DDT domain protein RLT2 | ||||
Swissprot | Q9FFH1 | 0.0 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A3Q7HEL9 | 0.0 | A0A3Q7HEL9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g053610.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2142 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |