PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g027560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-other
Protein Properties Length: 1782aa    MW: 201205 Da    PI: 5.4057
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g027560.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.7e-1846100357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                       kR   t++qle+Le+ ++ + yps++ r+eL+ klgL++rq ++WF+ rR k++k
  Sopen07g027560.1  46 KRKMKTASQLEILEKTYATDTYPSEALRAELSVKLGLSDRQLQMWFCHRRLKDRK 100
                       89999************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-1729100IPR009057Homeodomain-like
SuperFamilySSF466892.1E-1538100IPR009057Homeodomain-like
PROSITE profilePS5007116.43941101IPR001356Homeobox domain
SMARTSM003893.3E-1743105IPR001356Homeobox domain
CDDcd000862.00E-1344100No hitNo description
PfamPF000461.2E-1546100IPR001356Homeobox domain
PROSITE profilePS5082717.031579638IPR018501DDT domain
SMARTSM005711.7E-23579638IPR018501DDT domain
PfamPF027914.6E-19580635IPR018501DDT domain
PfamPF050666.4E-15759826IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.8E-89671009IPR028942WHIM1 domain
PfamPF156135.3E-1211481220IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1782 aa     Download sequence    Send to blast
MESDGGGNGE ADVPMAVAAA ATSDAGVNGS CDAGKKKVPE GEPKVKRKMK TASQLEILEK  60
TYATDTYPSE ALRAELSVKL GLSDRQLQMW FCHRRLKDRK ATPVKRQKKE EVSPAAMISS  120
GGQGDEMAVS GEIGKDHVSG SGSRVSPIGL MDLQVQQQLH QRVVHRPGTA VPRFRPEMPA  180
LKRYYEPPQA ISELRAIAFV EAQLGEPLRE DGPILGMEFD PLPPGAFGAP IVAAMQHKPA  240
GRPFEAQIYE RPDVNAIKGT TRTLREYQFL PEQPSNRSDS YEQSVPSHHY RSTEVQSTRA  300
ILSTGRSFMH GSEQVASGCS IPGLIPTLNL LPQGRQGHIS PASAEAEAVP QRSLVNIEVE  360
ASYSGQPMMA LESPYMSSDK RVIHDEERLE RKRKSEEARI AREVEAHEKR IRKELEKQDM  420
LQRKREEQMR KDMERQDRER RKEEERLLRE KLREEERYQR EQRREMERRQ KFLQKESMKA  480
ERMRLKEEMR REKEVARLKA ANVRANARRI AKESTELIED ERLELMELAA SKKGSPSTLS  540
LDSETLQNLE AFRDLLNEFP PKSVCLRKPF EVEPWTCSEE DVGNLFMVWR FLITFSDVLH  600
LWPFTLDEFV QAFHDYDPRL LAEIHIALLK LIIKDIEDVA RTPASAVGAN PNANPGGGHP  660
DIVEGAYAWG FDIRSWQSHL NALTWPEILR QFALSAGFGP KLKKQSVEPA YPRDENECNN  720
GADIISNLRS GVAAEKAVAK MQERGFSNLR RSRHRLTPGT VKFAAFHVLS LEGSKGLNIL  780
DVAEKIQKSG LRDLRTSKTP EASISAALSR DTKLFERTAP STYCVRDPYR KDPGDADAIL  840
SAAREKIRMF KNEYVNGEET EDVEKEVERD DESESDAADD PEVDDLVSEL KFAETPETQK  900
IDRTDGRSSS FDLTQTPEDL SMQNSTAIMH SVNFGELKAT SGDQSTASGV EAGNLDQEDT  960
VIDENNAGQR WVQGLMEGEY SDLTVEERLH ALVALIGIAN EGNSVRLILE ERLEAASALK  1020
KQIWAEAQLD KRRFKEEFLL KVQYPSVRSN TEQLCSVTSM EARQSPLHAV GHNEVADIPS  1080
LQQEAMHKLP DEPNNPSNVA VEKTCQMQET YGGQDNSQPQ HFAYVAEKSR SQLKAYIGHR  1140
AEETFVYRSL PLGQDRRRNR YWQFITSPSR NDPGSGRIFV ELRDGRWRLI DSEKDFNCLM  1200
ASLDIRGIRE SHLHSMLQNI EATFKVTARK HKYTEVKLDD SVKEHTSETV PSIDYCSNTG  1260
GSKSTICISN QETSEPSTSF LLGFGRNKME DSDALRRYAD LEKWMWEECV HPQFLCARKY  1320
GRMRCENLIS TCNNCHDTYF LEDKHCPSCH RTFSPTKSSY FLEHVAQCKE KLEDLFWPLC  1380
IMDSLPPLRV RLLRAQLASV EACIPPEALQ PVWSELYRRS WGTKLHIASA AGDLLQILTL  1440
LEGAIKREYL ISNYETTNEL LGAVSNSNLD GMVAVLPWVP HTTSAVALRL MELDCSLCYT  1500
QPQKAESLKD EESADFTMFK TNYAQVKRAT RVISAEAREY EKLEPDYSVK VGSGHANSGQ  1560
GRNRVRGGAH CRVRGGKSQR KVNASRSDSA QRSSTKNSDR LGHLPAWKGR DRGKGRRKRG  1620
RRSVRNRQKP VKNVEEVSPE EVPTTSQQDW NDVEDEETPQ FEAPDNDSDS GTSGSEDYKC  1680
QTTVNDYEDL VVADYGSFSG RNDHASTSVS YNISQRYTET AEDGIGEYED DHDEEDEEDG  1740
LANKNVQRYF DGESDDDGDR FMDEDLVETP NKDSESSSEY SD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081778.10.0homeobox-DDT domain protein RLT2
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A3Q7HEL90.0A0A3Q7HEL9_SOLLC; Uncharacterized protein
STRINGSolyc07g053610.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21422352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator