PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g027370.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 313aa    MW: 35459.9 Da    PI: 6.8705
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g027370.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.13.9e-3522146289
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssasec. 73 
                       +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak ai++l ++                    +++++ +  
  Sopen07g027370.1  22 TGRKDRHSKVYTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLDELppwnpnqipgstneadalvlEQQPEYQLq 114
                       79**************************************************************98888766665555555554333333333 PP

               TCP  74 ..eaesssssasnsssg...............k 89 
                          +e+++s+++nss +               +
  Sopen07g027370.1 115 reLEENNQSQVNNSS-NsylmqgggggggevqQ 146
                       221111222222222.12444555555555441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-3122121IPR005333Transcription factor, TCP
PROSITE profilePS5136931.9642482IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MKRATGGGEI VQVEGGHILR STGRKDRHSK VYTAKGPRDR RVRLAAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKNAID KLDELPPWNP NQIPGSTNEA DALVLEQQPE YQLQRELEEN  120
NQSQVNNSSN SYLMQGGGGG GGEVQQQSLG DTMKAFFPMN SGTSLMNFQN YPHEIMPRSS  180
LQNEDLGLSL HTTFHRASTS SHHHDDDHST LFSNQNFEAN YPRMASWNLL PQTFFNQNAN  240
NAFTQREPLQ SNFSHLINHH ANWEERPLVN GLIPNQVEIS NNSRHFTTDF QVPARIHGEH  300
HEYHSSASPN AHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-232982154Putative transcription factor PCF6
5zkt_B8e-232982154Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080481.10.0transcription factor TCP4
TrEMBLG3BGV00.0G3BGV0_SOLLC; TCP transcription factor 10
STRINGPGSC0003DMT4000243290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.38e-50TCP family protein