PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen07g026940.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 274aa MW: 29799.7 Da PI: 5.3625 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96 | 2.6e-30 | 74 | 132 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY +eHnh+ Sopen07g026940.2 74 QDSWSWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLDPTMLLITYCSEHNHQ 132 79*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-31 | 66 | 134 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.628 | 68 | 134 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-26 | 69 | 134 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-36 | 73 | 133 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-25 | 74 | 132 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MEDSSYKNLF FHKQEDSTGT PPDNAADSCF SGDEAAEVSM PSPRKRRGAK KKVISVPIIE 60 GDGSRSKGEV YPPQDSWSWR KYGQKPIKGS PYPRGYYRCS SSKGCPARKQ VERSRLDPTM 120 LLITYCSEHN HQIPAAAAAK HHHQNHPTTT TSSPTTSTGT AGDNNATAAV ATDSTVVDKS 180 SPEEPDLFAY QHDNGFSELA GELGWFSDMG TTTTFMESTS SSMAGSTWND SDVALMLPIR 240 EEDQSLYGDL GELPECSVVF RRYSVETPCC GGTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 7e-21 | 51 | 134 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 7e-21 | 51 | 134 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013284 | 0.0 | BT013284.1 Lycopersicon esculentum clone 134891F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015081017.1 | 0.0 | probable WRKY transcription factor 69 isoform X2 | ||||
TrEMBL | A0A3Q7HDB4 | 0.0 | A0A3Q7HDB4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g055280.2.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58710.2 | 2e-55 | WRKY DNA-binding protein 69 |