PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g026940.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 275aa    MW: 29886.8 Da    PI: 5.3625
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g026940.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY962.6e-3075133259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY +eHnh+
  Sopen07g026940.1  75 QDSWSWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRLDPTMLLITYCSEHNHQ 133
                       79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-3167135IPR003657WRKY domain
PROSITE profilePS5081131.62869135IPR003657WRKY domain
SuperFamilySSF1182902.88E-2670135IPR003657WRKY domain
SMARTSM007742.2E-3674134IPR003657WRKY domain
PfamPF031062.0E-2575133IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEDSSYKNLF FHKQEDSTGT PPDNAADSCF SGDEAAEVSM PSPRKSRRGA KKKVISVPII  60
EGDGSRSKGE VYPPQDSWSW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QVERSRLDPT  120
MLLITYCSEH NHQIPAAAAA KHHHQNHPTT TTSSPTTSTG TAGDNNATAA VATDSTVVDK  180
SSPEEPDLFA YQHDNGFSEL AGELGWFSDM GTTTTFMEST SSSMAGSTWN DSDVALMLPI  240
REEDQSLYGD LGELPECSVV FRRYSVETPC CGGTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-2152135679Disease resistance protein RRS1
5w3x_D7e-2152135679Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132840.0BT013284.1 Lycopersicon esculentum clone 134891F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081016.10.0probable WRKY transcription factor 65 isoform X1
TrEMBLA0A3Q7HDB40.0A0A3Q7HDB4_SOLLC; Uncharacterized protein
STRINGSolyc07g055280.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74682232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.15e-56WRKY DNA-binding protein 69