PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g026800.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 251aa    MW: 28994.2 Da    PI: 7.0741
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g026800.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g WT+eEd +l+ +++++G+ +W+  +++ g+ R++k+c++rw +yl
  Sopen07g026800.1 14 KGTWTPEEDRKLAAYITKYGSWNWRQLPKYAGLARCGKSCRLRWMNYL 61
                      799*******************************************97 PP
2Myb_DNA-binding58.51.5e-1867110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T+eEde+++++++qlG++ W++Ia +++ gR+++++k++w++
  Sopen07g026800.1  67 RGNYTKEEDEIILNLHAQLGNK-WSAIAIHLP-GRSDNEIKNHWHT 110
                       899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.899961IPR017930Myb domain
SuperFamilySSF466898.3E-3011108IPR009057Homeodomain-like
SMARTSM007174.6E-111363IPR001005SANT/Myb domain
PfamPF002491.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-231568IPR009057Homeodomain-like
CDDcd001671.20E-81661No hitNo description
PROSITE profilePS5129426.52662116IPR017930Myb domain
SMARTSM007176.9E-1766114IPR001005SANT/Myb domain
PfamPF002491.8E-1667110IPR001005SANT/Myb domain
CDDcd001673.68E-1169110No hitNo description
Gene3DG3DSA:1.10.10.605.4E-2669115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MVRTPCRDEN GRKKGTWTPE EDRKLAAYIT KYGSWNWRQL PKYAGLARCG KSCRLRWMNY  60
LRPNVKRGNY TKEEDEIILN LHAQLGNKWS AIAIHLPGRS DNEIKNHWHT ALKKRADYNS  120
SEGSKKCNKK KSESNVTKRK SNVENQNASA NNNNNNMHEN IVLESSEWSP NESSSEALSS  180
IDYQQDIFQE ELANLEEITS GSFWTQPFEV DTKIDFVAPS IDYCGLVCPP SPFIPHEFLS  240
SFDFDDCNNY W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141177109B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081791.10.0transcription factor MYB15-like
TrEMBLA0A3Q7HEC11e-173A0A3Q7HEC1_SOLLC; Uncharacterized protein
STRINGSolyc07g053230.2.11e-174(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.14e-54myb domain protein 107