PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g026450.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 398aa    MW: 44174.5 Da    PI: 5.7162
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g026450.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573105.25.1e-33155246397
            DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                       +++lws++D+++lL+G++++k+ +g++ps+d++af+ef++++++++vsksq+++K+rrL+kKf ++vk+   g+ep+f+k++d  +fe+sk+i
  Sopen07g026450.1 155 PRSLWSDDDQLALLKGILEYKTVKGMEPSADMSAFHEFIRGKLQAEVSKSQISDKVRRLRKKFLTNVKD---GEEPVFTKSQDFLVFEHSKRI 244
                       6789***************************************************************99...********************* PP

            DUF573  96 Wg 97 
                       Wg
  Sopen07g026450.1 245 WG 246
                       *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.3E-26157246IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAPKTKSRLV DQPPSASSSE VQELVEESQE EEEEQQSREE EGEEESGEET EEDEEPKTSH  60
PVVKRPISQK LVQTPQKPQF SSGSENGSGS DSEAESGSSL PSPSASAFTV KPNVAAKAAA  120
SSKATPKRPQ EAQKEKGRKK PKVAEEEEKK SAATPRSLWS DDDQLALLKG ILEYKTVKGM  180
EPSADMSAFH EFIRGKLQAE VSKSQISDKV RRLRKKFLTN VKDGEEPVFT KSQDFLVFEH  240
SKRIWGAPGA INGGVKDNVN NSSNGKAKKS VEVRKISEPK RSAKVSKPKD DEKQKEEEKQ  300
IAVKEVVKED IVKGDQLDFQ SKYPRLAASL EAMSGLSKMY PNGTSLLKEK MSLIATDKAK  360
VLEEKWKILE DDEADLMVKR LDFIAEHYRL VVDAMRGN
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269|PubMed:12028578}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082843.10.0STOREKEEPER protein
SwissprotQ94IK20.0STK_SOLTU; STOREKEEPER protein
TrEMBLA0A0V0ILV00.0A0A0V0ILV0_SOLCH; Putative neurofilament heavy polypeptide-like
STRINGSolyc07g052900.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23692041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-24DNA-binding storekeeper protein-related transcriptional regulator