PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g026390.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 388aa    MW: 43180.4 Da    PI: 5.4784
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g026390.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573102.92.7e-32147237497
            DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                       + lws++D+++lL+G++++k+ +g++p +d++af+ef+k++++++vsksql+eK++rLKkKf ++vk    g+ep+f k++d ++f++sk+iW
  Sopen07g026390.1 147 RFLWSDDDQLALLKGIVEYKEVEGMEPNADMSAFHEFIKGKLQVEVSKSQLSEKLKRLKKKFLTNVKG---GEEPVFMKDQDFSVFQHSKRIW 236
                       569**************************************************************999...********************** PP

            DUF573  97 g 97 
                       g
  Sopen07g026390.1 237 G 237
                       8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.6E-26149237IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MALKIKSRLV DQPPSASSSE DQELVEESHE EEQQQSGEGE GEEESGEETE EPKTAHPVVK  60
RFLTQKLQLS SESGSENGSG SESEAESGHS LPSPSASDFT VKPSVPAKAA APSKSVAKRP  120
QKAQKEKGRK KPKIAEEEEK KSAATPRFLW SDDDQLALLK GIVEYKEVEG MEPNADMSAF  180
HEFIKGKLQV EVSKSQLSEK LKRLKKKFLT NVKGGEEPVF MKDQDFSVFQ HSKRIWGAPG  240
TSNGVKEILT NSTNGKAKKA VEIKKSSEPK ESAKVSKPKD DEKHKEVEEQ VAVKEVVRED  300
IVKDDHQDFQ SEYPRLAASF ESMAGMSTMY PNGTSFLKEK LSLIATDKAK ELEEKWKKLE  360
DDEAALMVKR LDFIAEHYRL VVDAMRGN
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269|PubMed:12028578}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243440.10.0STOREKEEPER protein isoform X3
SwissprotQ94IK20.0STK_SOLTU; STOREKEEPER protein
TrEMBLA0A3Q7I8D90.0A0A3Q7I8D9_SOLLC; Uncharacterized protein
STRINGSolyc07g052760.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-21DNA-binding storekeeper protein-related transcriptional regulator