PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g026380.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 384aa    MW: 43157.5 Da    PI: 6.3186
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g026380.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573100.21.8e-31142233397
            DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                       +++lws++D+++lL+G+ ++k+ +g++p +d++af+ef++++++++vsksql+eKi+rLKkKf ++ k    ++ep+f k +d  +f++sk+i
  Sopen07g026380.1 142 PRSLWSDDDQLALLKGIAEYKTVKGMEPNADMTAFHEFIRGKLQVEVSKSQLSEKIKRLKKKFFTNAKG---DEEPVFMKGQDFLVFQHSKRI 231
                       6789*************************************************************9998...9******************** PP

            DUF573  96 Wg 97 
                       Wg
  Sopen07g026380.1 232 WG 233
                       *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045049.9E-25144233IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MAPKTKSRLV DQPPSASSSE EQELVEESQE EEEQQQQSRE ETEEEEEEEP PVVKRSITQK  60
PVKTAQKLQF SSESDSENGS GSESKKSDHS PPSPSVSEFT IKPIVSAPSK SAGKRPQEAQ  120
KEKGRKKPKI AEEEDKKSAA TPRSLWSDDD QLALLKGIAE YKTVKGMEPN ADMTAFHEFI  180
RGKLQVEVSK SQLSEKIKRL KKKFFTNAKG DEEPVFMKGQ DFLVFQHSKR IWGAPGTSSG  240
VKEIVTNSTN GKAKKTVEAK KSSEPKRSGK VSKHKDDEEH KEEEKQVAVK EVVKEDIVKV  300
DQQDFQSEYP RLAASFESMS GMFTIYPNGT SFLKEKMSLI APDKAKVLEE KWKKLEDDEA  360
ALMVKRLDLI AEHYRLVVDA VRGN
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269|PubMed:12028578}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080451.10.0STOREKEEPER protein-like
SwissprotQ94IK21e-175STK_SOLTU; STOREKEEPER protein
TrEMBLM1CH600.0M1CH60_SOLTU; Uncharacterized protein
STRINGSolyc07g052760.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23692041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.14e-22DNA-binding storekeeper protein-related transcriptional regulator