PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g026360.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 380aa    MW: 42287.4 Da    PI: 6.2281
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g026360.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57394.21.3e-29144235397
            DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                       ++ lws++D+++lL+G+ ++ka +g++p +d++af+ef+++++++++sk+ l +K+rrLK K+ ++vk+   g+ep+f k +d  +fe+sk+i
  Sopen07g026360.1 144 PRNLWSDDDQLALLKGIAEYKAVKGVEPIADMSAFHEFIRGKLQVEASKKRLRDKVRRLKTKYLTNVKD---GEEPVFMKGQDYLVFEHSKRI 233
                       5789***************************************************************99...********************* PP

            DUF573  96 Wg 97 
                       Wg
  Sopen07g026360.1 234 WG 235
                       *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.1E-24146235IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MAPKTKSRLV DQPPSASSSE EQELVEESQE EEEQQQQSRE EEGEEESGEE TEEPKTAHPV  60
VKRSITQKLQ FSSDSGSESG SGSESGHSLP SPSALDFTVK PSVPAKADTP SKPAAKRQRD  120
TQTEKGRKKP KIAEEEEKKS AATPRNLWSD DDQLALLKGI AEYKAVKGVE PIADMSAFHE  180
FIRGKLQVEA SKKRLRDKVR RLKTKYLTNV KDGEEPVFMK GQDYLVFEHS KRIWGAPGTS  240
NGVSTNGTAK ITVEVNKSSE PKRSAKVSKP KDDEKHKAEE KQVAVKEVVK EDIFKGDQLD  300
FQSEFPHLTA SFESMAGMST MYPNGTSFLK EKMSSIATDK TKVLDKKWKK LEDDEAALMV  360
NRLDLIAEHY KLVINAMSGN
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator. Binds specifically to the B-box motif, a promoter element that is required for the tuber-specific and sucrose inducible expression of the patatin gene. {ECO:0000269|PubMed:12028578}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080432.10.0STOREKEEPER protein-like
SwissprotQ94IK21e-173STK_SOLTU; STOREKEEPER protein
TrEMBLM1CH610.0M1CH61_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000673840.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23692041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.14e-15DNA-binding storekeeper protein-related transcriptional regulator