PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen07g026340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 195aa MW: 21922.8 Da PI: 4.5011 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58.9 | 6.3e-19 | 2 | 52 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie+ + rq +skR+ +ilKK +EL vLCd++v +++fs+ g++ yss Sopen07g026340.1 2 KKIEDPTSRQQFYSKRKDTILKKSNELAVLCDVDVGLLMFSPAGEVTSYSS 52 68***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00120 | 1.13E-19 | 1 | 52 | No hit | No description |
SMART | SM00432 | 4.3E-17 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.29E-19 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.946 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-19 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-9 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-9 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MKKIEDPTSR QQFYSKRKDT ILKKSNELAV LCDVDVGLLM FSPAGEVTSY SSKERLEDVM 60 LLAMNKAGEL NKLSPENPNE QALMDSLTQS KHEAEMVEKI AIVEAHEEKL NGVKERLSEA 120 QQKIRYYEPQ VESINSVQEA DAYEKFILSA LELIQLSKAK LLGDQEFLQR NENVAVSSVN 180 AEDMAAEGTS GGWMY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 7e-86 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. | |||
GenBank | HG975519 | 7e-86 | HG975519.1 Solanum lycopersicum chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027774154.1 | 1e-141 | agamous-like MADS-box protein AGL66 isoform X2 | ||||
Refseq | XP_027774155.1 | 1e-141 | agamous-like MADS-box protein AGL66 isoform X2 | ||||
Refseq | XP_027774156.1 | 1e-141 | agamous-like MADS-box protein AGL66 isoform X2 | ||||
TrEMBL | A0A0V0HT18 | 1e-125 | A0A0V0HT18_SOLCH; Putative MADS-box protein defh21-like | ||||
TrEMBL | A0A3Q7HEN1 | 1e-115 | A0A3Q7HEN1_SOLLC; Formin-like protein | ||||
STRING | Solyc07g052720.2.1 | 1e-108 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5292 | 18 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 9e-21 | AGAMOUS-like 104 |