PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g025920.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 489aa    MW: 54146.9 Da    PI: 5.6467
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g025920.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-162067148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+ Ed +l d+vk++G g+W+++ r  g+ R++k+c++rw ++l
  Sopen07g025920.1 20 KGPWTAGEDAILMDYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 67
                      79******************************************9986 PP
2Myb_DNA-binding52.79.6e-1773116146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +g++T+eE+ +++d++++lG++ W++ a+ ++ gRt++++k++w++
  Sopen07g025920.1  73 KGAFTPEEERIIIDLHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 116
                       799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5321567IPR017930Myb domain
SuperFamilySSF466897.49E-3018114IPR009057Homeodomain-like
SMARTSM007173.7E-121969IPR001005SANT/Myb domain
PfamPF002497.2E-142067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-232174IPR009057Homeodomain-like
CDDcd001673.51E-102267No hitNo description
PROSITE profilePS5129426.20468122IPR017930Myb domain
SMARTSM007171.7E-1672120IPR001005SANT/Myb domain
PfamPF002492.4E-1573116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2575121IPR009057Homeodomain-like
CDDcd001675.36E-1275118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MAPDDRGTRN GGGTRQALKK GPWTAGEDAI LMDYVKKHGE GNWNAVQRNS GLMRCGKSCR  60
LRWANHLRPH LKKGAFTPEE ERIIIDLHAK LGNKWARMAA QLPGRTDNEI KNYWNTRLKR  120
RQRAGLPIYP QELQSQNQQE NNQPQSLISS PFDPQRATYN NPPPLSLLNV FNPSTMRPSI  180
THQFPLSSNT IFRDPPKGLP LALPSSLRNS PLFSGSASMP NNNFGPTLSN LMPVSSFQQN  240
YPNFSFTTRP FMGIPSNQNE LMSSMGLSSI NYPSGPSVMT PSSENTCSDF GSSDANNYAN  300
VELSQGNSGL LEDLLKGTQN FPRSTNIEEN NSLDLNGKGK SLWQDYGLVG EEARDHQDEA  360
FLTEESVYSF AHGGDVNLNN SSESSSTDPN ASSGIFLRKE GSLQGINQVD EHIMSLLNNF  420
PLDQEPVPNW YDESDDKKMN SEIGADDHKA ESLGEDSSKS QVAITTTSGL KQHDWELGGC  480
CWNNMPPFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-30181215107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081848.10.0transcription factor MYB101
TrEMBLA0A3Q7HBJ40.0A0A3Q7HBJ4_SOLLC; Uncharacterized protein
STRINGSolyc07g052300.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.21e-69myb domain protein 101