PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen07g025440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 627aa MW: 68232.4 Da PI: 6.7917 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.7 | 1.6e-30 | 350 | 408 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Sopen07g025440.1 350 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGTHNHP 408 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-33 | 334 | 410 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.02E-28 | 342 | 410 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.677 | 344 | 410 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-36 | 349 | 409 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.8E-27 | 351 | 408 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 627 aa Download sequence Send to blast |
MAKGSGLSFD PDPIKPIPIV LNSFLEPHNN QFYPNNKFFY NLTSMESSYN NRSPPPTIQF 60 PVNLNCSTAT THHHDHDHQD QQQHHIRPVI DEMDFFAEKK NATNSDDPTT ANDTDRKESN 120 TTTTPPELDF NINTALHLLT ANTYTDQSIM DDSLSPNSDD KRIKNELVVL QAELERMNGE 180 NRRLRDMLNQ VKNNYNTLQV HMMTMMHQQQ QNQESGQRDG KNEEVKHQQP NNQNGHGGGQ 240 VVPRQFMDLG LAAGAGGTAS EAEEASLSSS EGPSGREKSR SPVNNIESSS TCGIVREDSP 300 EKVSPGWGPN KIPRLGNTST NNKPADQATE ATMRKARVSV RARSEAPMIT DGCQWRKYGQ 360 KMAKGNPCPR AYYRCTMAAG CPVRKQVQRC AEDRTILITT YEGTHNHPLP PAAIAMASTT 420 SSAAKMLLSG SMPSADGLMN SNFFARTLLP CSSSMATISA SAPFPTVTLD LTQSPNPLQF 480 PRPPNQFQIP FSNPPHNNIL ANPAALLPQI FGQALYNQSK FSGLQSSQDL EGQQHPSTMP 540 SSINPSNHNP VADTVNALTS DPNFTAALAA AITSLIGNPG QPNNGTNNTI ATTTTPANNN 600 NNTVTSNGNN NNNGSTNKVT NSSFPAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 336 | 412 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF736800 | 0.0 | KF736800.1 Capsicum annuum WRKY6 (WRKY6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015080750.1 | 0.0 | probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-136 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | M1B7H2 | 0.0 | M1B7H2_SOLTU; Uncharacterized protein | ||||
STRING | Solyc07g051840.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA945 | 24 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 1e-109 | WRKY family protein |