PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g024390.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 420aa    MW: 45835.4 Da    PI: 7.3697
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g024390.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.91.2e-29145202260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       +DgynWrKYGqK v+g+ef+rsYY+Ct  +C +kk+vers+ d+++++i+Y  +H+h+k
  Sopen07g024390.1 145 EDGYNWRKYGQKLVRGNEFTRSYYKCTRLNCLAKKQVERSQ-DGNITNIHYIATHEHPK 202
                       7****************************************.***************85 PP
2WRKY101.16.5e-32321379159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYGqK vkg+++prsYYrC+sagCp+kk+vers+++ k v++ Yeg+H+h+
  Sopen07g024390.1 321 VNDGYRWRKYGQKFVKGNPNPRSYYRCSSAGCPAKKHVERSSHNAKSVITAYEGQHDHD 379
                       58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.528139203IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-25139203IPR003657WRKY domain
SuperFamilySSF1182903.01E-23142203IPR003657WRKY domain
SMARTSM007748.5E-31144202IPR003657WRKY domain
PfamPF031061.9E-22145201IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-33307381IPR003657WRKY domain
SuperFamilySSF1182904.58E-28313381IPR003657WRKY domain
PROSITE profilePS5081135.071316381IPR003657WRKY domain
SMARTSM007742.0E-36321380IPR003657WRKY domain
PfamPF031063.2E-25322378IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGIPKDDVSQ SNQKDSSPSN VPEKDAENVH QKKGLESEGG ASESSRVSVL PKKEPYIISC  60
KSDSPVKDGN ISLVPGKASD SSQQIQSQKM EEVVSQPHQE QVTSSPMAEN ALCKLQSRRN  120
PDTSVQDLPS DQGVTPFSEP EKPSEDGYNW RKYGQKLVRG NEFTRSYYKC TRLNCLAKKQ  180
VERSQDGNIT NIHYIATHEH PKPLNSPQIS PELVVPSETR RPDMSTGTPH EGEKSTALGE  240
ACQSIVPSES LSSAAVVSAG GSAQDTVLKP LKSGDEGDNN GGRNSKRRKK EVPTSDDMTP  300
PMKSPSETRH IVQTSSEVDV VNDGYRWRKY GQKFVKGNPN PRSYYRCSSA GCPAKKHVER  360
SSHNAKSVIT AYEGQHDHDI PPSRTVIQNT AEADSNTTRI SGESTSESGE SKHIVHIGAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-34308382175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080798.10.0WRKY transcription factor 1
RefseqXP_015080799.10.0WRKY transcription factor 1
RefseqXP_027774165.10.0WRKY transcription factor 1
SwissprotQ9SI377e-67WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A3Q7HAR30.0A0A3Q7HAR3_SOLLC; Uncharacterized protein
STRINGSolyc07g047960.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.27e-70zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]