PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g023730.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CO-like
Protein Properties Length: 409aa    MW: 45511.7 Da    PI: 5.3307
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g023730.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.8e-07444539
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                      +C+ ++e++ + +C++++ +lC +C  ++H+       H++
  Sopen07g023730.1  4 ICEYCGEQRSIVYCRSDSACLCLSCDRNIHSAnalsqrHSR 44
                      7*****************************65677777765 PP
2zf-B_box22.32.7e-074687439
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                       +C++++++++++ C + ++ lC++C    H +      H++
  Sopen07g023730.1 46 LVCERCNSQPAIFRCVEERVSLCQNCDWLAHASsstcstHKR 87
                      68************************9999976777777776 PP
3CCT59.61.1e-20352394143
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                       R  a+lRYkeK+ktR+F+K++rY sRKa+Ae R RvKGrFvk 
  Sopen07g023730.1 352 RSDAVLRYKEKKKTRQFDKRVRYVSRKARAEVRRRVKGRFVKD 394
                       889**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.542147IPR000315B-box-type zinc finger
CDDcd000215.03E-7447No hitNo description
SMARTSM003365.0E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.0014390IPR000315B-box-type zinc finger
CDDcd000212.37E-44790No hitNo description
SMARTSM003360.184890IPR000315B-box-type zinc finger
PfamPF062033.7E-15352394IPR010402CCT domain
PROSITE profilePS5101714.832352394IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGYICEYCGE QRSIVYCRSD SACLCLSCDR NIHSANALSQ RHSRTLVCER CNSQPAIFRC  60
VEERVSLCQN CDWLAHASSS TCSTHKRQAL GCYTGCPSAV ELSTIWSFIL GDPSVCDSTC  120
EQGMGSMSIT DCQPGDSQHR QVKEKSQDIS SDEANDLHNL VKSAPFMGSS MPSLDNELSN  180
VELLVDSTYL TWSKVKNSGT KGYNDPFYDD FNMDEVDLSV ENYKELFGVS IDNRDQLFKN  240
EDIDDFFGMK DMSVAESSFQ GVNAVEGSAV GKVNAVKSAC SNAASAESMM SCKTEPPTLC  300
FAMQQSSFSF SNLTGESNAG DYQDCGASSM LRMGEPSWRP PCPESSMPST SRSDAVLRYK  360
EKKKTRQFDK RVRYVSRKAR AEVRRRVKGR FVKDGDAYDY DPLHQTRSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082832.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_015082833.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9LUA91e-123COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLM1BGT70.0M1BGT7_SOLTU; B-box zinc finger protein 7
STRINGSolyc07g045180.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-114B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]