PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g023180.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARF
Protein Properties Length: 890aa    MW: 98476.6 Da    PI: 6.451
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g023180.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.61.4e-24129230199
                       EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F   ++
  Sopen07g023180.1 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldySQQPPCQ-ELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVIFI--WN 218
                       99*****************************97677775.9************************************************..78 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                       ++ +l+++++r+
  Sopen07g023180.1 219 ENNQLLLGIRRA 230
                       88889****997 PP
2Auxin_resp120.11.7e-39255338183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+t++ F+++YnPras+seFv++++k+ ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Sopen07g023180.1 255 AAHAAATNTRFTIFYNPRASPSEFVIPLAKYAKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 338
                       79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-49114258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-44122244IPR015300DNA-binding pseudobarrel domain
CDDcd100175.17E-23128229No hitNo description
SMARTSM010194.3E-25129231IPR003340B3 DNA binding domain
PfamPF023621.1E-22129230IPR003340B3 DNA binding domain
PROSITE profilePS5086313.042129231IPR003340B3 DNA binding domain
PfamPF065071.3E-34255338IPR010525Auxin response factor
SuperFamilySSF542772.26E-6751830No hitNo description
PROSITE profilePS5174523.145756841IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 890 aa     Download sequence    Send to blast
MRVSSSGFNP QPEEAGEKKC LNSELWHACA GPLVSLPPVG SRVVYFPQGH SEQVAASTNK  60
EVDAHIPNYP GLPPQLICQL HNLTMHADVE TDEVYAQMTL QPLSPQEQKD VCLLPAELGI  120
PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDY SQQPPCQELI AKDLHGNEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG DAVIFIWNEN NQLLLGIRRA NRPQTVMPSS  240
VLSSDSMHIG LLAAAAHAAA TNTRFTIFYN PRASPSEFVI PLAKYAKAVY HTRISVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSP FSLRLKRPWP SGLPSLPGFP HGDLTMNSPL SWLRGDMGDQ GMQSLNFQGF  420
GATPFMQPRM DASMLGLQPD ILQTMAALDP SKLANQSLMQ FQHSIPNSSA PLSQSQMLQP  480
SHSQHNLIQG FSENHLISQA QMLQQQLQRR QNFNDQQQLL QPQLQQHQEV NSQFQHQQQT  540
KTISGLSQMA SATQPHLSHL QVLSSTGSPQ TFSDILGNHV NASSNSNMQS LLSSFSRDGA  600
SAVLNMHETH PLVSSSSSSK RIALESQLPS RVTPFVVSQP EDVIAHNTKV SDLSSLLPPF  660
PGRESFSDYR GVEDSQSNAL YGFADSLNIL QTGMSNMKGS SGDNGSLSIP YATSTFTSTV  720
GNEYPLNSDM TASSCVDESG FLQSSENGDQ ANPTNRIFVK VQKSGSFGRS LDISKFSSYH  780
ELRSELARMF GLEGLLEDPE RSGWQLVIVD RENDVLLLGD DPWQEFVNNV WYIKILSPHE  840
VQQMGKEGLD LPNGVQAQTL PGNVNGCDDY MNQKGSRNTM NGIPLGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621335942388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5976280.0FJ597628.1 Solanum melongena ARF8 (ARF8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082268.10.0auxin response factor 6-like isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLM1BAY70.0M1BAY7_SOLTU; Auxin response factor
STRINGPGSC0003DMT4000411270.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23682452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]