PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g022890.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 414aa    MW: 45918.2 Da    PI: 4.8608
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g022890.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.61.7e-112534113374
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                        lLl+cAe+v+ ++l +a  lL ++ el+sp g++ +R+aayf+e L+ar+ +s  + y+ l+ ++ + ++s++ ++al+ ++ +sP++kfsh
  Sopen07g022890.1  53 GLLLQCAEFVAMENLDEAADLLPEIAELSSPFGSSAERVAAYFAESLSARIISSHLRFYSPLNLKSLTLTHSQKLFTALQSYNTISPLIKFSH 145
                       58******************************************************************************************* PP

              GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                        taNqaI++a+ege++vH+iD+di+qGlQWp L+q L+sR+++  s++iTgvgs    s e le+tg+rL++fA+++g+pfef+++  k  + 
  Sopen07g022890.1 146 YTANQAIYQALEGEDHVHVIDLDIMQGLQWPGLFQILSSRSRKLRSIKITGVGS----SMELLESTGRRLTEFASSFGLPFEFQPFEGKIGHI 234
                       ******************************************************....***************************98888899 PP

              GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                        +l++L vk gE+++Vn+++  h l++ ++s       + +l+  l+Pk++++veq+++h +++Fl rf+eal+yysalfd+l  +l++es e
  Sopen07g022890.1 235 TDLNQLGVKIGETTVVNWMH--HCLYNITGSDLG----TFRLLTLLRPKLITLVEQDLSH-GGNFLSRFVEALHYYSALFDALGDGLSEESAE 320
                       9******************9..566655666666....999*******************.789***************************** PP

              GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       r++vE++l+g ei+n+va  g +r+ +   +e+W + l++ GF pv+ls + a+qa+lll +++ +gy++ ee+g+l lgWkd +L+++SaW+
  Sopen07g022890.1 321 RHTVEQQLFGSEIRNIVAVGGPKRTGEVP-VERWGDELKRIGFLPVSLSGTPAAQASLLLGMFP-RGYTLVEENGCLKLGWKDLSLLTASAWQ 411
                       ***********************887765.9*********************************.***************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.76925392IPR005202Transcription factor GRAS
PfamPF035145.9E-11053411IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MSSKRSISEF TPVSDEPQLL TKRPRNERGE EEEEEGEELL LVDADSIGLR LLGLLLQCAE  60
FVAMENLDEA ADLLPEIAEL SSPFGSSAER VAAYFAESLS ARIISSHLRF YSPLNLKSLT  120
LTHSQKLFTA LQSYNTISPL IKFSHYTANQ AIYQALEGED HVHVIDLDIM QGLQWPGLFQ  180
ILSSRSRKLR SIKITGVGSS MELLESTGRR LTEFASSFGL PFEFQPFEGK IGHITDLNQL  240
GVKIGETTVV NWMHHCLYNI TGSDLGTFRL LTLLRPKLIT LVEQDLSHGG NFLSRFVEAL  300
HYYSALFDAL GDGLSEESAE RHTVEQQLFG SEIRNIVAVG GPKRTGEVPV ERWGDELKRI  360
GFLPVSLSGT PAAQASLLLG MFPRGYTLVE ENGCLKLGWK DLSLLTASAW QPCD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-153374125380Protein SCARECROW
5b3h_A1e-153374124379Protein SCARECROW
5b3h_D1e-153374124379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015083043.10.0scarecrow-like protein 23
SwissprotQ9FHZ11e-171SCL23_ARATH; Scarecrow-like protein 23
TrEMBLM1AUK90.0M1AUK9_SOLTU; Uncharacterized protein
STRINGSolyc07g043330.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107452126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-151GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]