PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g022840.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 823aa    MW: 94349.2 Da    PI: 7.9343
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g022840.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1682.4e-2176157290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +Y+eYA++vGF +++++s++sk++g++++ +  Cs+ g+++e+ ++       r+  +t+Cka++++k+++dgkw ++++ +eHnHe++
  Sopen07g022840.1  76 YYREYARSVGFGITIKASRRSKKSGKFIDVKIACSRFGTKRESGSS-------RSCPKTDCKASIHMKRKQDGKWFIHSFMKEHNHEIC 157
                       8***************************************999877.......9999******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.6E-1976157IPR004330FAR1 DNA binding domain
PfamPF105512.6E-27240333IPR018289MULE transposase domain
PROSITE profilePS509669.606520556IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-6527554IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-5531558IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MEIDLRLSSG RNKRLDVYVD TNAIDDSIQS HVGEENVDGN GIGMDIVDVD IIDKGIENGE  60
PEKGIEFDTK EAAYAYYREY ARSVGFGITI KASRRSKKSG KFIDVKIACS RFGTKRESGS  120
SRSCPKTDCK ASIHMKRKQD GKWFIHSFMK EHNHEICQDD FYYSVKGRSK KSADVVYQKK  180
GLQLALDEGD VELLLDTLAL MQAERPNSYY AIDFDKEKRM RNVFWIDAKG RNDYVHFCDV  240
IYLDTHYIRN KYKVPFLPIV GVNHHFQFLL LGCALVGEES SSTFNWLMRT WLRAVGGQSP  300
RVVITDDDIS LKEAVEEVFP KAQHCFCLWN VMEKVSQNLV GKITKREDFV KKLKKCMWFP  360
LKEEEFEKRW WKMVDSFKLR DDDLIRSFFE NRTKWVPVYM RNTFLAGLST FERSESVSSF  420
FKRYISSETT FKEFIDQYKL FVHEMYEEEA KADIEMRHRL PTIKTLSPYE KQMSTVYTNS  480
VFMKFQAEVY GVAACTILNE CEEGTEKLYR VNDREKHQSF MVSWCARESC IVCSCHFFEY  540
AGILCRHAIT VLQVSGVPNI PAMYKLERWT REAKTKGRAC GIPSNPHHRI QRLNDLCKLA  600
AKFGEIGSLS WENYELAVNT LQAALHDCVN ANNSVKSSLV SNVSFSQCDP NFNEEIQGGS  660
MAKSSKRKKV QKMRKVQSDV EVLSTRIQDS SLQMDQSNSK LPTHEDAFLA QRHVQGMDLS  720
SRMATIAGYY APPHQSVHGL GELSSFSMLQ DRYCSNHQAS HGVLGNLNYI SAHSGYYSPQ  780
SIQGLLQGQL SVRAPLVHPS FNIQENSSDM DNSTSVTGKH LQY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015082857.10.0protein FAR1-RELATED SEQUENCE 2-like isoform X3
TrEMBLA0A3Q7HCC90.0A0A3Q7HCC9_SOLLC; Uncharacterized protein
STRINGSolyc07g043260.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.30.0FAR1-related sequence 2