PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen07g021330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 630aa MW: 71527.1 Da PI: 6.1353 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.3 | 1.1e-17 | 90 | 141 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++tk+q+ee+e+lF+++++p++++++eL++k++L+ q+ +WFqNrR++ k Sopen07g021330.1 90 RRHTKQQIEEMEALFKECPKPDKKKIKELSDKIELEPLQIVFWFQNRRTQLK 141 479*********************************************9988 PP | |||||||
2 | START | 95.1 | 1.4e-30 | 287 | 393 | 94 | 206 |
EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 ++ae+q++sp p Rd +fvR++ + +g wvivdvS+d++ p + R+ ++pSg++i++ sn skvtw+eh++ + l+h ++ +v Sopen07g021330.1 287 IYAEFQVPSPQIPnRDCYFVRSCNKIVDGLWVIVDVSLDNT---P----ITRCWKRPSGCVIQQISNDISKVTWIEHIEAHDTLIHTFYKAFV 372 789**********************************9965...3....58****************************************** PP HHHHHHHHHHHHHHTXXXXXX CS START 186 ksglaegaktwvatlqrqcek 206 +s+la+gak+w + l+rqce+ Sopen07g021330.1 373 NSSLAFGAKRWISILDRQCER 393 *******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.4E-18 | 75 | 137 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.75E-16 | 77 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.933 | 83 | 143 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-15 | 86 | 147 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.00E-14 | 88 | 144 | No hit | No description |
Pfam | PF00046 | 3.1E-15 | 90 | 141 | IPR001356 | Homeobox domain |
SuperFamily | SSF55961 | 4.26E-24 | 210 | 395 | No hit | No description |
CDD | cd08875 | 9.99E-72 | 213 | 392 | No hit | No description |
SMART | SM00234 | 1.2E-15 | 215 | 393 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 9.6E-5 | 270 | 375 | IPR023393 | START-like domain |
Pfam | PF01852 | 2.4E-24 | 287 | 393 | IPR002913 | START domain |
PROSITE profile | PS50848 | 20.854 | 298 | 396 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.43E-11 | 416 | 572 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 630 aa Download sequence Send to blast |
MDSIMNSANK NSSMIENVPS SSRLPFGQSS SMSKSQPNPL SIESETISIK EIMQLLTDDD 60 VNSKSEYNDN EVDEQDGKGD EHTNKKMRNR RHTKQQIEEM EALFKECPKP DKKKIKELSD 120 KIELEPLQIV FWFQNRRTQL KNQNQHSENL SLRDEYDKLR TEYAWLSEVV NNGCPNCSDH 180 GFHLGETPDN DQYLRLKNAR QEEEVVHISR QHIAEVIRAA MYELLQMAQM GEPLWLPNND 240 LNIEEYKRKF PRRNEPKPNG IKTCASRESS LVTMNHINLV KIFMDTIYAE FQVPSPQIPN 300 RDCYFVRSCN KIVDGLWVIV DVSLDNTPIT RCWKRPSGCV IQQISNDISK VTWIEHIEAH 360 DTLIHTFYKA FVNSSLAFGA KRWISILDRQ CERLASVEAT NLPQNNITHT RVSGTKTHKW 420 TTFTESGYNI NDLQVMTRQS INDPGRPRGL VLCASTSIWL PVLPKLLFDF LRNENTRGKW 480 DILTNGGTIQ EVTHIANGME IGNSISISRV NCPNQAQNGM LIIQESITDP TGSFIVYAPI 540 DIRAIDIILC GGNPDVVPLL PSGFAIFPDG PSGSTNHEIS DYSGSFLTIA FQILVDTVPT 600 TNISPQSVAA VDKLMFCTIY KIKNALFLNF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. | |||||
UniProt | Probable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975446 | 0.0 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015081481.1 | 0.0 | homeobox-leucine zipper protein ROC7-like | ||||
Swissprot | Q6ZAR0 | 1e-175 | ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1 | ||||
Swissprot | Q93V99 | 1e-175 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A3Q7HBQ0 | 0.0 | A0A3Q7HBQ0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g041850.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17218 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 1e-163 | protodermal factor 2 |