PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g021330.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 630aa    MW: 71527.1 Da    PI: 6.1353
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g021330.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-1790141556
                       SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++tk+q+ee+e+lF+++++p++++++eL++k++L+  q+ +WFqNrR++ k
  Sopen07g021330.1  90 RRHTKQQIEEMEALFKECPKPDKKKIKELSDKIELEPLQIVFWFQNRRTQLK 141
                       479*********************************************9988 PP

2START95.11.4e-3028739394206
                       EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
             START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                       ++ae+q++sp  p Rd +fvR++ +  +g wvivdvS+d++   p    + R+ ++pSg++i++ sn  skvtw+eh++  + l+h  ++ +v
  Sopen07g021330.1 287 IYAEFQVPSPQIPnRDCYFVRSCNKIVDGLWVIVDVSLDNT---P----ITRCWKRPSGCVIQQISNDISKVTWIEHIEAHDTLIHTFYKAFV 372
                       789**********************************9965...3....58****************************************** PP

                       HHHHHHHHHHHHHHTXXXXXX CS
             START 186 ksglaegaktwvatlqrqcek 206
                       +s+la+gak+w + l+rqce+
  Sopen07g021330.1 373 NSSLAFGAKRWISILDRQCER 393
                       *******************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-1875137IPR009057Homeodomain-like
SuperFamilySSF466891.75E-1677144IPR009057Homeodomain-like
PROSITE profilePS5007114.93383143IPR001356Homeobox domain
SMARTSM003892.0E-1586147IPR001356Homeobox domain
CDDcd000866.00E-1488144No hitNo description
PfamPF000463.1E-1590141IPR001356Homeobox domain
SuperFamilySSF559614.26E-24210395No hitNo description
CDDcd088759.99E-72213392No hitNo description
SMARTSM002341.2E-15215393IPR002913START domain
Gene3DG3DSA:3.30.530.209.6E-5270375IPR023393START-like domain
PfamPF018522.4E-24287393IPR002913START domain
PROSITE profilePS5084820.854298396IPR002913START domain
SuperFamilySSF559613.43E-11416572No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MDSIMNSANK NSSMIENVPS SSRLPFGQSS SMSKSQPNPL SIESETISIK EIMQLLTDDD  60
VNSKSEYNDN EVDEQDGKGD EHTNKKMRNR RHTKQQIEEM EALFKECPKP DKKKIKELSD  120
KIELEPLQIV FWFQNRRTQL KNQNQHSENL SLRDEYDKLR TEYAWLSEVV NNGCPNCSDH  180
GFHLGETPDN DQYLRLKNAR QEEEVVHISR QHIAEVIRAA MYELLQMAQM GEPLWLPNND  240
LNIEEYKRKF PRRNEPKPNG IKTCASRESS LVTMNHINLV KIFMDTIYAE FQVPSPQIPN  300
RDCYFVRSCN KIVDGLWVIV DVSLDNTPIT RCWKRPSGCV IQQISNDISK VTWIEHIEAH  360
DTLIHTFYKA FVNSSLAFGA KRWISILDRQ CERLASVEAT NLPQNNITHT RVSGTKTHKW  420
TTFTESGYNI NDLQVMTRQS INDPGRPRGL VLCASTSIWL PVLPKLLFDF LRNENTRGKW  480
DILTNGGTIQ EVTHIANGME IGNSISISRV NCPNQAQNGM LIIQESITDP TGSFIVYAPI  540
DIRAIDIILC GGNPDVVPLL PSGFAIFPDG PSGSTNHEIS DYSGSFLTIA FQILVDTVPT  600
TNISPQSVAA VDKLMFCTIY KIKNALFLNF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
UniProtProbable transcription factor that may be involved in protoderm differentiation and radial pattern formation during early embryogenesis. {ECO:0000269|PubMed:11846882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081481.10.0homeobox-leucine zipper protein ROC7-like
SwissprotQ6ZAR01e-175ROC1_ORYSJ; Homeobox-leucine zipper protein ROC1
SwissprotQ93V991e-175PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A3Q7HBQ00.0A0A3Q7HBQ0_SOLLC; Uncharacterized protein
STRINGSolyc07g041850.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1721855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-163protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lee JH, et al.
    Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases.
    Plant Cell, 2008. 20(1): p. 152-67
    [PMID:18223036]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Yi J, et al.
    OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
    J. Exp. Bot., 2016. 67(8): p. 2425-37
    [PMID:26912801]
  5. Dou M,Cheng S,Zhao B,Xuan Y,Shao M
    The Indeterminate Domain Protein ROC1 Regulates Chilling Tolerance via Activation of DREB1B/CBF1 in Rice.
    Int J Mol Sci, 2016. 17(3): p. 233
    [PMID:26927068]
  6. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]