PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g018910.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 475aa    MW: 53375.4 Da    PI: 6.9545
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g018910.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.8e-13299344454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L  ++eYI  L
  Sopen07g018910.1 299 HHMISERKRREKLNDSFQLLRSLLPPG-----TKKDKASVLASTTEYITCL 344
                       68899********************97.....8***************877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.47E-11293349No hitNo description
PROSITE profilePS5088815.243295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-17296364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-15298363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-11299344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-14301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MSLGGIYNGE NVVAQRLFEE YKHSWLIMDN GRIPGLAFKN NVPYMELKFA DLQSHASNPV  60
QLQFYYEAGI KTTICMGCSI GEIEFGMTSS PQVNLEMGMK NLFPEYFSTR SVLARPQTLL  120
TNIDQNRPSP SSSFSLDSPG EYSSLLFNVA TTSYVPDAFP EQTIRPVSTT AMPFHQQQPI  180
QTLTQLRGIQ FPGVETDDAA LTRAYLAVMT SPSSSSSSHQ SRENIDVPIT DYHYQKSTAF  240
RRFGPGLGRP SNVQIGTSRT IRRENILRRS IIFFRNLDMM RRKEQIQANQ RAPTSTQVHH  300
MISERKRREK LNDSFQLLRS LLPPGTKKDK ASVLASTTEY ITCLKGQVEE LSKKNEIMLN  360
AQALDKSRMM KSNEVGDGND ERVVVEIIKN VSSESESRTV ELQVSVRSGE CNVLDLATRL  420
LEFLKTQDNL SLESVAANTR PSMVTHVTLT ITIQGSEWDE SGFEEAVKRV VDDLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303308ERKRRE
2304309RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081845.10.0putative transcription factor bHLH041 isoform X1
TrEMBLA0A3Q7H7U50.0A0A3Q7H7U5_SOLLC; Uncharacterized protein
STRINGSolyc07g039570.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45672339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-56bHLH family protein