PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen07g013830.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HB-other

Protein Properties

Length: 471aa MW: 54021.2 Da PI: 6.6623

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen07g013830.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.8	2.1e-14	24	74	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ e +++Lee+F++++ ps+++ +L +k+gL+ +q+ WFqN+R + k Sopen07g013830.1 24 KYDVEKTQQLEEFFKECQRPSEDQQNQLGRKVGLDSKQIMAWFQNKRSQTK 74 577899*****************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.0E-14	4	70	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.27E-13	12	75	IPR009057	Homeodomain-like
SMART	SM00389	9.5E-9	16	80	IPR001356	Homeobox domain
PROSITE profile	PS50071	14.463	16	76	IPR001356	Homeobox domain
CDD	cd00086	1.56E-9	17	74	No hit	No description
Pfam	PF00046	8.5E-12	24	74	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence Send to blast
MTDSGKKQVG ESSTTPKRQR HCHKYDVEKT QQLEEFFKEC QRPSEDQQNQ LGRKVGLDSK 60 QIMAWFQNKR SQTKAKDDKS DNYTLRKENE FFRCEIMAMK DKKKNNMCPQ CDGPSIGEEE 120 RMCNLENLKT ESQRIREEHL RISRIISSSR GISFGIESNL APLSSTLGSL PDSSNDCLLS 180 QIICGSPIPF DQENNHNEDN KVQAQLINNN NIPIMSSLPQ GNYGIHHDNR GKSIFDIVDA 240 GMKEMLVLLD VNDPVWVKSS GDERCFILCE SYDRKFPNSY RPYKSSSTRI ESSKHFGVVP 300 MTATELIPIF LDPVTWIEHI QVDDKNQVYD IFKDLVYGHQ TYGAERWIVT LQRMSERYNF 360 AMGALYPTEH DLKGVVYDIP KGVNNLMNIS QRMVKSFFET LCMKDGLEFS SSSQLNCGER 420 VSVRKNLEIT QQQGFIATAA TSLWLPLSFE TIFNFLKDDN TRCQVCIKPS L

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence Send to blast

MTDSGKKQVG ESSTTPKRQR HCHKYDVEKT QQLEEFFKEC QRPSEDQQNQ LGRKVGLDSK  60
QIMAWFQNKR SQTKAKDDKS DNYTLRKENE FFRCEIMAMK DKKKNNMCPQ CDGPSIGEEE  120
RMCNLENLKT ESQRIREEHL RISRIISSSR GISFGIESNL APLSSTLGSL PDSSNDCLLS  180
QIICGSPIPF DQENNHNEDN KVQAQLINNN NIPIMSSLPQ GNYGIHHDNR GKSIFDIVDA  240
GMKEMLVLLD VNDPVWVKSS GDERCFILCE SYDRKFPNSY RPYKSSSTRI ESSKHFGVVP  300
MTATELIPIF LDPVTWIEHI QVDDKNQVYD IFKDLVYGHQ TYGAERWIVT LQRMSERYNF  360
AMGALYPTEH DLKGVVYDIP KGVNNLMNIS QRMVKSFFET LCMKDGLEFS SSSQLNCGER  420
VSVRKNLEIT QQQGFIATAA TSLWLPLSFE TIFNFLKDDN TRCQVCIKPS L

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015081365.1	0.0	homeobox-leucine zipper protein HDG11-like
TrEMBL	A0A3Q7HA64	0.0	A0A3Q7HA64_SOLLC; Uncharacterized protein
STRING	Solyc11g011940.1.1	1e-111	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA18594	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	1e-39	homeodomain GLABROUS 11