PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen07g008660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | CPP | ||||||||
Protein Properties | Length: 570aa MW: 61902.1 Da PI: 7.5452 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.5 | 1.5e-14 | 124 | 163 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 + k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C+N+ e+ Sopen07g008660.1 124 KPKQCNCKHSRCLKLYCECFASGIFCDG-CNCANCHNNVEN 163 5699************************.********9875 PP | |||||||
2 | TCR | 50.9 | 3e-16 | 208 | 247 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+C+C dCkN e Sopen07g008660.1 208 KHNKGCHCKKSGCLKKYCECFQANILCSENCRCMDCKNFE 247 589***********************************76 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 4.5E-16 | 123 | 163 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.619 | 124 | 248 | IPR005172 | CRC domain |
Pfam | PF03638 | 9.4E-12 | 126 | 160 | IPR005172 | CRC domain |
SMART | SM01114 | 1.6E-19 | 208 | 249 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-12 | 211 | 246 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 570 aa Download sequence Send to blast |
MEKIEEGHFP PKKAESEAAS VQVETDNPAK KLARQLDFTG GVPGQALTVS LQEHANQIIQ 60 PEVIKSSQLT VSMKSTQLIS PQPQLQQHIL LMPMQQAPVL PPQPLIRPLS MQSSSEAKDG 120 TPKKPKQCNC KHSRCLKLYC ECFASGIFCD GCNCANCHNN VENEASRQEA VEATLERNPN 180 AFRPKIASSP HGTREEREEA GDGLVLPKHN KGCHCKKSGC LKKYCECFQA NILCSENCRC 240 MDCKNFEGNE ERQAHFHGDH ANNMAYLQQT ANVAITGAIG SSGYGSPPVN KNRKIQELFS 300 GSMIKDPVHR LGQFQQENQI KASVPPSLLS SIPGTRVSNA AALGPPKLNY RSLLADIIQN 360 HDIKELCSVL IVYAQEAAKI LSDEKDASLK QAKHHRKASY PSSGVGKVLR DDCSTGIQAE 420 SIMVDDSRLD GADVSAERPI SPGTLALMCD EQDTTFTAAA APPNDLTSLS NNTSSQLPHG 480 QGRAEIYPEL ESIVLAQTRD CLKKLITLGE IKEKKCSLMV RDTDSGRQNN VSSNGIVNTV 540 PPPPPPQQKV DSGTTAANTT RPKVHPPDGK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-31 | 122 | 257 | 10 | 132 | Protein lin-54 homolog |
5fd3_B | 5e-31 | 122 | 257 | 10 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT013447 | 0.0 | BT013447.1 Lycopersicon esculentum clone 132102R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015080427.1 | 0.0 | protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Swissprot | Q9SZD1 | 1e-163 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A3Q7H6K3 | 0.0 | A0A3Q7H6K3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc07g020710.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2401 | 24 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29000.1 | 1e-165 | Tesmin/TSO1-like CXC domain-containing protein |