PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen07g007600.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 328aa MW: 37321.2 Da PI: 9.0723

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen07g007600.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	28.7	4.3e-09	48	88	50	90
FAR1 50 kerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k++ + +etrtgC a++ ++++ ++ ++++++ ++HnH l+ Sopen07g007600.1 48 KNKAQGQETRTGCLAHIIISRQPNEMFRIISFIEKHNHLLV 88 6778999*******************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.6E-7	46	88	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MGSSESQSEC NLSIKLGMEF DSDEHAYDYY NEYASAIGFS IRKEYANKNK AQGQETRTGC 60 LAHIIISRQP NEMFRIISFI EKHNHLLVSP TLAHLLPSQR KIKFSQAYEI DLLDNSGIRP 120 KASFDYAARQ AGGKSFLGYT KRDQKNYLWD KSKESLKHGV ARSLVDYFEK RILEDLAFRY 180 SLQLDDDGLI ANVFWADVKM IMSADIPQTF FTDQDPVISS AISLITPQTE ASESKEGYEV 240 VVKGANEMIA MLRDIKKRKE SPDKSALSKS TQNEPNEIVF IDNTNFTKVT GLKRKEPTRR 300 SNTWPKSFTE KYGQKKGNFI AKISSMPN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018631664.1	1e-96	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G3DDY7	2e-88	A0A2G3DDY7_CAPCH; Uncharacterized protein
STRING	XP_009619707.1	8e-87	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3021	17	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-25	FAR1-related sequence 5