PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen07g003170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 419aa MW: 46538.2 Da PI: 6.2357 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.5 | 9.7e-08 | 362 | 395 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Sopen07g003170.1 362 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 395 469*****************************87 PP | |||||||
2 | ELK | 28.8 | 2.7e-10 | 316 | 337 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Sopen07g003170.1 316 ELKHELKQGYKEKIVDIREEIL 337 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.1E-19 | 150 | 194 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.8E-17 | 152 | 193 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.4E-25 | 203 | 259 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.2E-18 | 209 | 258 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.969 | 316 | 336 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 316 | 337 | IPR005539 | ELK domain |
Pfam | PF03789 | 9.7E-7 | 316 | 337 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 336 | 399 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-16 | 338 | 402 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 4.7E-11 | 338 | 403 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.88E-11 | 339 | 400 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-25 | 343 | 400 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.2E-17 | 356 | 395 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 419 aa Download sequence Send to blast |
MVLHQQQQQQ QQQQQQNAVL RSMLPESPHH DARKSPPTWL NTSLLRQQHS QFGNASSPSS 60 AAAAAAVAGG NNFLHLQTSN SDSSNSNQWL SPTAAAGGGG NAGGGGHNDE LSESMNFAKK 120 MSQQHSGGGE ENNNNNNNNN NEEENSWERE KCKADILNHP LYDQLLSAHV SCLRIATPVD 180 QLPRIDAQLA QSQNVVAKYS VLGQGQPPLD DKDLDQFMTH YVLLLSSFKE QLQQHVRVHA 240 MEAVMACWEL EQSLQSLTGV APGEGTGATM SDDDDDQADS DTNFLDGGFD GPDSMGFGPL 300 VPTESERSLM ERVRQELKHE LKQGYKEKIV DIREEILRKR RAGKLPGDTT SVLKAWWQSH 360 SKWPYPTEED KARLVQETGL QLKQINNWFI NQRKRNWHSN PSTSSSQKSK RKSAGETKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May have a role to play in formative events in ovule and embryo morphogenesis. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | GQ261247 | 0.0 | GQ261247.1 Solanum lycopersicum cultivar Rio Grande PtoR Hop-interacting protein THI041 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015082177.1 | 0.0 | homeobox protein knotted-1-like LET12 | ||||
Swissprot | O22300 | 0.0 | LET12_SOLLC; Homeobox protein knotted-1-like LET12 | ||||
TrEMBL | G8Z269 | 0.0 | G8Z269_SOLLC; Hop-interacting protein THI041 | ||||
STRING | Solyc07g007120.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1432 | 24 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25220.1 | 1e-154 | KNOTTED1-like homeobox gene 3 |