PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g002940.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 471aa    MW: 54161.1 Da    PI: 4.6042
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g002940.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1318.5e-41561842128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       ppGfrFhPtd el+++yL +k+++ +l+  + i e++iyk+eP ++ +  k +++e+ wy F++rd+ky++g+r+ r t +gyWkatg dk +
  Sopen07g002940.1  56 PPGFRFHPTDYELIKHYLGRKLANLPLHP-NKIYELNIYKYEPDTIAAqlKPTTTENIWYVFTPRDRKYPNGERPDRCTWNGYWKATGIDKII 147
                       9*************************999.77**************8523445577799********************************** PP

               NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++  + +++g ++ Lv+y g+ p+g+ktdW+mhey +
  Sopen07g002940.1 148 VDDdNISKIGSRRALVYYIGKPPNGKKTDWIMHEYMI 184
                       *9856677***************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0001803648IPR018247EF-Hand 1, calcium-binding site
SuperFamilySSF1019411.44E-4748210IPR003441NAC domain
PROSITE profilePS5100548.36855211IPR003441NAC domain
PfamPF023653.3E-2256183IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MENHNTSLTN NESKDNLISA NHINELPISA VFSNKDSNGD QIMSPEDVEA LMNKFPPGFR  60
FHPTDYELIK HYLGRKLANL PLHPNKIYEL NIYKYEPDTI AAQLKPTTTE NIWYVFTPRD  120
RKYPNGERPD RCTWNGYWKA TGIDKIIVDD DNISKIGSRR ALVYYIGKPP NGKKTDWIMH  180
EYMIPKITIP NSSTPRNPKL DEWVLCKFYN RNDVITSGST RRKRKRGDHD PIIDEVHQDP  240
VRNDFTNFNN NDNHAVMLSE GTSLGNDPTS YFNDNYSHAT MFFQGTDQDS MRNDPTSYDN  300
NYNHAMTLHP QVHMEVPTLP QCPYMPFLSN YQNYVSDHFN DYSIVDPPLP LRIEPTPTNN  360
SIEHDYTMNN ESVGGDYGEY SEVHDQYYVS DQYIVDNYES QYDTNNFVNG ETTTSNNVVN  420
GETITSNNFV NGETTTSNNF VNGETTNSDN YETNTSNNFA NDETSTSKED C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-455521217166NO APICAL MERISTEM PROTEIN
1ut4_B3e-455521217166NO APICAL MERISTEM PROTEIN
1ut7_A3e-455521217166NO APICAL MERISTEM PROTEIN
1ut7_B3e-455521217166NO APICAL MERISTEM PROTEIN
4dul_A3e-455521217166NAC domain-containing protein 19
4dul_B3e-455521217166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220225RRKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081198.10.0NAC transcription factor 56-like
TrEMBLK4CBF50.0K4CBF5_SOLLC; Uncharacterized protein
STRINGSolyc07g006840.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139361213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-48NAC domain containing protein 25