PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g001750.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 509aa    MW: 55755.9 Da    PI: 7.126
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g001750.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.53.6e-25199255259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk +e+s++ ++v+ei+Y+ +Hnh+
  Sopen07g001750.1 199 RDGYNWRKYGQKQVKSPQGSRSYYRCTHSECCAKK-IECSDHTNRVMEIIYRTQHNHD 255
                       7********************************98.*********************7 PP
2WRKY96.61.6e-30371428259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++er  + +++++itY+g H+h+
  Sopen07g001750.1 371 SDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIERVVDTTSALTITYKGVHDHD 428
                       7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-22194257IPR003657WRKY domain
SuperFamilySSF1182907.06E-20197257IPR003657WRKY domain
SMARTSM007741.2E-22198256IPR003657WRKY domain
PfamPF031069.5E-18200255IPR003657WRKY domain
PROSITE profilePS5081118.452200257IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-31355430IPR003657WRKY domain
SuperFamilySSF1182906.67E-27364430IPR003657WRKY domain
PROSITE profilePS5081131.33365430IPR003657WRKY domain
SMARTSM007741.3E-34370429IPR003657WRKY domain
PfamPF031061.4E-23372427IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MDDENESSKS TGLKNSNLEE DKISNKIENS SVHNDDNGDD RVIDGSSGAE SLRESKTEAL  60
ISETLAHPNA ESSVQIEIDG QSEFDSEFSP SYQLSEVPVE YELPSFGFSE KIKDRISVTK  120
PGTLNAQART EHQRRVPDAA SSLELSSLSV AQSISSVPSA TLAERRSAAA VNCSTGEVVK  180
QSSDAQVLAL VPVLKRPTRD GYNWRKYGQK QVKSPQGSRS YYRCTHSECC AKKIECSDHT  240
NRVMEIIYRT QHNHDPPPRV NCPRESKSAL LSSPTNGKSI IAHPSRNSIE TVVSSLKENL  300
QESLPIAETA NQDSGGSDTD TEITIREEHR DEAGQKKRSR KSDTSCLDSV SKPGKKPKLV  360
VHAACDVGIS SDGYRWRKYG QKMVKGNPHP RNYYRCTSAG CPVRKHIERV VDTTSALTIT  420
YKGVHDHDMP VPKKHHGPPS APLIAATAPA SVTNMHANKP EPLQHQKSTT QWSVDKEGEL  480
TGEKLDGGGE KAMESARTLL SIGFEIKPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-26358430274WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080327.10.0probable WRKY transcription factor 32
SwissprotP595831e-111WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A0V0I9Y10.0A0A0V0I9Y1_SOLCH; Putative WRKY transcription factor 32-like
STRINGSolyc07g005650.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91892127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-112WRKY DNA-binding protein 32