PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g035300.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 255aa    MW: 29390.6 Da    PI: 4.8601
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g035300.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W++eEd+ll++++k+ G ++W++ ++  g+ R++k+c++rw +yl
  Sopen06g035300.1 14 RGPWSKEEDDLLINYIKKNGHPNWRALPKLAGLLRCGKSCRLRWTNYL 61
                      89******************************99************97 PP
2Myb_DNA-binding43.66.6e-1467110146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg++T +E++ ++++++ lG+  W++Ia++++ gRt++++k+ w++
  Sopen06g035300.1  67 RGNFTHQEEDTIIKLHQVLGNS-WSAIAARLP-GRTDNEIKNIWHT 110
                       89******************99.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.89961IPR017930Myb domain
SuperFamilySSF466892.81E-2911108IPR009057Homeodomain-like
SMARTSM007173.6E-141363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
CDDcd001676.53E-101661No hitNo description
PROSITE profilePS5129422.93462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2465115IPR009057Homeodomain-like
SMARTSM007176.0E-1266114IPR001005SANT/Myb domain
PfamPF002497.0E-1367110IPR001005SANT/Myb domain
CDDcd001674.52E-769112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRSPCCEKL GLKRGPWSKE EDDLLINYIK KNGHPNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF THQEEDTIIK LHQVLGNSWS AIAARLPGRT DNEIKNIWHT RLKKKRNESQ  120
LKETQSEPEN TNVDVHLEEA NNSNDKNSVI SNPKINIEIH QQPSSSSSVS SSSEDSCSNT  180
TATSSESRNQ IMSDNLLEID DDIWSEVVWA QVDDNYVDLS LMEDNYQINS IFDDNWFWDD  240
LFTRSNELML ELPEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26121155107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a regulatory role in meristem function. Functions as component of a regulatory network controlling the establishment and/or development of the shoot system by the regulation of apical meristem function (PubMed:9681014). May play a role in tolerance to boric acid (PubMed:16861809). {ECO:0000269|PubMed:16861809, ECO:0000269|PubMed:9681014}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), drought, light and wounding in leaves. Down-regulated by drought and ABA in roots. {ECO:0000269|PubMed:9681014}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078812.20.0transcription factor MYB13-like
SwissprotQ9LNC91e-72MYB13_ARATH; Transcription factor MYB13
TrEMBLA0A3Q7H5K61e-168A0A3Q7H5K6_SOLLC; Uncharacterized protein
STRINGSolyc06g083900.2.11e-169(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.11e-72myb domain protein 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]