PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g035250.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 282aa MW: 32932 Da PI: 5.3596

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g035250.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	153.5	9.7e-48	10	140	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGf+F P+deel+++yL +k++++k + ++ + e+d++++ePw+Lp+ +k +++ewyfFs rd+ky+tg +nrat sgyWkatgkd+ v Sopen06g035250.1 10 LPPGFKFCPSDEELICHYLYNKTANEKGLVLNFsLVEIDLHTCEPWQLPEVAKLNSSEWYFFSFRDRKYSTGFWANRATISGYWKATGKDRIV 102 79******************999994444555***********87788899********************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 l+ +++++g++ktLvfyk+rap+g ktdW+mhe+rle Sopen06g035250.1 103 LDPqTSNAIGMRKTLVFYKNRAPNGIKTDWIMHEFRLE 140 9867788**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.58E-57	8	159	IPR003441	NAC domain
PROSITE profile	PS51005	54.507	10	158	IPR003441	NAC domain
Pfam	PF02365	1.2E-25	11	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MDLREIGATL PPGFKFCPSD EELICHYLYN KTANEKGLVL NFSLVEIDLH TCEPWQLPEV 60 AKLNSSEWYF FSFRDRKYST GFWANRATIS GYWKATGKDR IVLDPQTSNA IGMRKTLVFY 120 KNRAPNGIKT DWIMHEFRLE NPHIPLKEDW VLCRVFYKNK GENNNNCTNK LSSQNKCEAI 180 VTSSNVSQSP IYMNQHSLNC DIKYQNSPHQ IIQNSNIIHH HLFDLLVKDH LETTRLTECS 240 QEDDQYGLLF DMDFEESYVQ DEQIHSSLED MRFDDENSAI LI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-43	9	159	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-43	9	159	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-43	9	159	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-43	9	159	16	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-43	9	159	19	169	NAC domain-containing protein 19
3swm_B	1e-43	9	159	19	169	NAC domain-containing protein 19
3swm_C	1e-43	9	159	19	169	NAC domain-containing protein 19
3swm_D	1e-43	9	159	19	169	NAC domain-containing protein 19
3swp_A	1e-43	9	159	19	169	NAC domain-containing protein 19
3swp_B	1e-43	9	159	19	169	NAC domain-containing protein 19
3swp_C	1e-43	9	159	19	169	NAC domain-containing protein 19
3swp_D	1e-43	9	159	19	169	NAC domain-containing protein 19
4dul_A	1e-43	9	159	16	166	NAC domain-containing protein 19
4dul_B	1e-43	9	159	16	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015078792.1	0.0	protein CUP-SHAPED COTYLEDON 3-like
TrEMBL	A0A3Q7H1Y9	0.0	A0A3Q7H1Y9_SOLLC; Uncharacterized protein
STRING	PGSC0003DMT400051915	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1882	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	4e-82	NAC domain containing protein 74