PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g034130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 120aa MW: 13410.9 Da PI: 4.4304 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 42.2 | 2.3e-13 | 3 | 50 | 53 | 100 |
DUF260 53 eredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +reda+ s+vyeA ar+rdPvyG+vg+i++lq+++ +l++el+++ +e Sopen06g034130.1 3 NREDAVISMVYEATARLRDPVYGSVGIISALQKHIFHLQSELNEASAE 50 79****************************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.816 | 1 | 51 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.1E-12 | 3 | 47 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MDNREDAVIS MVYEATARLR DPVYGSVGII SALQKHIFHL QSELNEASAE AMSLRTQLSD 60 ASTSLPSSLM QVSPFTPENH EFHHSQNSSQ QNAYSNNDLQ LILPEAADYC FQQVLLPLPY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027773898.1 | 6e-83 | LOB domain-containing protein 25-like | ||||
TrEMBL | A0A3Q7H1C1 | 3e-75 | A0A3Q7H1C1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g082770.2.1 | 5e-76 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13147 | 14 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 1e-16 | LOB domain-containing protein 25 |