PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g033990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 27911 Da PI: 4.8038 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.4 | 2.7e-21 | 96 | 146 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +grW+AeIrdp+ r kr++lg+++t+eeAa +++a+ kl+g Sopen06g033990.1 96 KKFRGVRQRP-WGRWAAEIRDPT----RgKRVWLGTYDTPEEAAIVYDKAAVKLKG 146 59********.**********84....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 7.9E-114 | 4 | 248 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 4.34E-33 | 96 | 156 | No hit | No description |
SMART | SM00380 | 8.7E-40 | 97 | 160 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-13 | 97 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.197 | 97 | 154 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-30 | 97 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-23 | 97 | 156 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.7E-10 | 98 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-10 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MTENSVPVIK FTQHIVTTNK HVFSEHDEKS NSELQRVVRI ILTDADATDS SDDEGRNTVR 60 RVKRHVTEIK LMPSTKSIGD RKRRSVSPDS DVTRRKKFRG VRQRPWGRWA AEIRDPTRGK 120 RVWLGTYDTP EEAAIVYDKA AVKLKGPDAV TNFPVSTAAE VTVTVTETET ESVADGGDKS 180 ENDVALSPTS VLCNNDFAPF DNLGFCEVDA FGFDVDSLFR LPDFAMTEKY YGDEFGEFDF 240 DDFALEAR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-21 | 96 | 155 | 4 | 64 | ATERF1 |
3gcc_A | 4e-21 | 96 | 155 | 4 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 96 | KRRSVSPDSDVTRRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015079614.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6 | ||||
Swissprot | O04682 | 1e-156 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | M1CZU0 | 1e-152 | M1CZU0_SOLTU; Uncharacterized protein | ||||
STRING | Solyc06g082590.1.1 | 1e-155 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5227 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 3e-36 | cytokinin response factor 4 |