PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g033910.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRAS

Protein Properties

Length: 132aa MW: 15868.2 Da PI: 5.7215

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g033910.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	123.9	1.9e-38	2	128	248	374
GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 +n++ F +rf eal ++s+ fd++ea++pre+e r++ E+e++gr+i+nv+a egaer+er e+++kW++r + aGF+++pl+++++k++k+ Sopen06g033910.1 2 YNASFFTTRFREALFHFSSQFDMFEATMPREDEGRMMFEQEVFGRDIMNVIASEGAERVERPESYKKWSMRNQIAGFRQLPLDQDIVKEVKTK 94 6999*************************************************************************************** PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++++ + v+e+s+++++gWk+r ++++S+W+ Sopen06g033910.1 95 VKMFYHADFLVDEDSNWMLQGWKGRIMYALSVWE 128 *888***********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.491	1	108	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.7E-36	2	128	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MYNASFFTTR FREALFHFSS QFDMFEATMP REDEGRMMFE QEVFGRDIMN VIASEGAERV 60 ERPESYKKWS MRNQIAGFRQ LPLDQDIVKE VKTKVKMFYH ADFLVDEDSN WMLQGWKGRI 120 MYALSVWEPI HK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015078928.1	9e-91	scarecrow-like protein 11
Swissprot	O80933	2e-51	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A3Q7H181	2e-86	A0A3Q7H181_SOLLC; Uncharacterized protein
TrEMBL	M1CZT4	3e-88	M1CZT4_SOLTU; Uncharacterized protein
STRING	Solyc06g082530.1.1	9e-90	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	9e-54	GRAS family protein