PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g033910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 132aa    MW: 15868.2 Da    PI: 5.7215
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g033910.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS123.91.9e-382128248374
              GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                       +n++ F +rf eal ++s+ fd++ea++pre+e r++ E+e++gr+i+nv+a egaer+er e+++kW++r + aGF+++pl+++++k++k+ 
  Sopen06g033910.1   2 YNASFFTTRFREALFHFSSQFDMFEATMPREDEGRMMFEQEVFGRDIMNVIASEGAERVERPESYKKWSMRNQIAGFRQLPLDQDIVKEVKTK 94 
                       6999***************************************************************************************** PP

              GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       +++++   + v+e+s+++++gWk+r ++++S+W+
  Sopen06g033910.1  95 VKMFYHADFLVDEDSNWMLQGWKGRIMYALSVWE 128
                       *****888*************************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.4911108IPR005202Transcription factor GRAS
PfamPF035146.7E-362128IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MYNASFFTTR FREALFHFSS QFDMFEATMP REDEGRMMFE QEVFGRDIMN VIASEGAERV  60
ERPESYKKWS MRNQIAGFRQ LPLDQDIVKE VKTKVKMFYH ADFLVDEDSN WMLQGWKGRI  120
MYALSVWEPI HK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078928.19e-91scarecrow-like protein 11
SwissprotO809332e-51SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A3Q7H1812e-86A0A3Q7H181_SOLLC; Uncharacterized protein
TrEMBLM1CZT43e-88M1CZT4_SOLTU; Uncharacterized protein
STRINGSolyc06g082530.1.19e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.19e-54GRAS family protein