PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g033700.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 174aa    MW: 19263 Da    PI: 7.7107
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g033700.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.52.7e-4471061100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +Ca+Ck+lrr+Cak+C++apyfp ++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +
  Sopen06g033700.1   7 PCASCKLLRRRCAKGCIFAPYFPPDDPHKFAIVHKVFGASNISKMLQELPIQQRADAVSSLVYEANARVRDPVYGCVGAISFLQNQVSQLQMQ 99 
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  Sopen06g033700.1 100 LAVAQAE 106
                       ***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.6726107IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-437104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MGTGSSPCAS CKLLRRRCAK GCIFAPYFPP DDPHKFAIVH KVFGASNISK MLQELPIQQR  60
ADAVSSLVYE ANARVRDPVY GCVGAISFLQ NQVSQLQMQL AVAQAEILCI QMQQEPVPCS  120
LPTTLMEQEL DKSPYGISNN NNNNFNNNLQ QYLSFASSSS SIMQDPVKRE SLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4921247129LOB family transfactor Ramosa2.1
5ly0_B1e-4921247129LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080111.11e-127LOB domain-containing protein 12
SwissprotQ8LBW33e-77LBD12_ARATH; LOB domain-containing protein 12
TrEMBLM1CZR11e-110M1CZR1_SOLTU; Uncharacterized protein
STRINGSolyc06g082310.2.11e-126(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-77LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]