PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g032060.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 163aa    MW: 18939.8 Da    PI: 4.7602
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g032060.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-16243548
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      T++E++l ++++ ++G++ W++Ia +++ gRt++++k++w++++
  Sopen06g032060.1  2 TPQEELLVLQLHSKYGNR-WSKIAGKLP-GRTDNEIKNYWRTHM 43
                      9*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001678.04E-12143No hitNo description
SMARTSM007171.2E-11145IPR001005SANT/Myb domain
PROSITE profilePS5129424.888147IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-20244IPR009057Homeodomain-like
SuperFamilySSF466892.57E-13251IPR009057Homeodomain-like
PfamPF002495.3E-15242IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MTPQEELLVL QLHSKYGNRW SKIAGKLPGR TDNEIKNYWR THMRKQAQDE KKNTNKASIS  60
PSSSNCSSSS ANSPVEDFST ERNELLQVAG ENKIYEGDQN MMVYSMDEIW KEVESTEEIE  120
TKNDLPAMAS NTRDYNYCPD SIWMSTHDHY YFDNHQDFSF FTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0130440.0BT013044.1 Lycopersicon esculentum clone 114294R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077480.11e-120transcription factor MYB48-like
TrEMBLA0A3Q7HWX11e-116A0A3Q7HWX1_SOLLC; Uncharacterized protein
STRINGSolyc06g075660.2.11e-118(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.21e-28myb domain protein 48