PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g031560.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARF
Protein Properties Length: 671aa    MW: 74898.9 Da    PI: 6.1243
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g031560.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.6e-23103203198
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++         ++ +   ++ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+vvF   +
  Sopen06g031560.1 103 FAKTLTQSDANNGGGFSVPRYCAETIfpkldftADPPVQ--VVKAKDVHGETWNFRHIYRGTPRRHLLTSGWSAFVNKKKLVAGDSVVFV--K 191
                       89*****************************97656555..799**********************************************..5 PP

                       SSEE..EEEEE- CS
                B3  87 rsefelvvkvfr 98 
                        ++ el+v+++r
  Sopen06g031560.1 192 AENDELCVGIRR 203
                       588899****98 PP
2Auxin_resp107.41.6e-35264345383
        Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         a+++++Fe+vY+P ast+e++v++++v++a++v+++ GmRfkmafeted+s++++ +G +++v+ +dp+rWp+S+Wr+L+
  Sopen06g031560.1 264 YLAANGQPFEIVYYPGASTPEYCVRASSVRAAMSVQWCSGMRFKMAFETEDFSQISWfMGSISSVQVVDPIRWPHSPWRLLQ 345
                       57899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-2793204IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-3697208IPR015300DNA-binding pseudobarrel domain
CDDcd100172.47E-21102203No hitNo description
PfamPF023625.3E-21103203IPR003340B3 DNA binding domain
SMARTSM010192.3E-21103205IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464103205IPR003340B3 DNA binding domain
PfamPF065079.1E-31263345IPR010525Auxin response factor
PROSITE profilePS5174517.706574652IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MEVVEEKCVD SLFWHACTGS MVQIPPVNSK VFYFPQGYAE HTFTNVDFTV LARIPPMILC  60
RVDAVKFLAD TETDEVYAKI RLIPVEDFED DSVVEETEKP AFFAKTLTQS DANNGGGFSV  120
PRYCAETIFP KLDFTADPPV QVVKAKDVHG ETWNFRHIYR GTPRRHLLTS GWSAFVNKKK  180
LVAGDSVVFV KAENDELCVG IRRVKRGGIG GRETQSGWNS SACSYGGFVT EDENSSTNGN  240
LISYGERFRD KGKVSPDEVV RVSYLAANGQ PFEIVYYPGA STPEYCVRAS SVRAAMSVQW  300
CSGMRFKMAF ETEDFSQISW FMGSISSVQV VDPIRWPHSP WRLLQVTWDE PDLLQNVKSV  360
NPWLVELVSN MPDINLSHNS PPRKRLCLPQ QFPFDGQFPL PSFSGNPLTS SSYSRYPSDS  420
STAGIQGARH VRFGVPLLGL HRSEKLQLGV LQPPASQQAD ADSEIPIGTS KVQKESNENI  480
SCLLTMGTSS QMEKADNVKT PRFLLFGQPI LTEQQMSSVL STHAPPQVQT ERNSDWAQLK  540
TERITPGWKC LSESLSSTFL WNKGYHAAEL GASTDHCKVF LDSEDVGRTL DLSVLGSYAE  600
LYKRLADMFE MERLDMVTRV LYLDATGASK QIGDEPFSDF IKTAKRLTIL KKSGNSATRK  660
WLTDLPILNV V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-75936651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1952470.0HM195247.1 Solanum lycopersicum auxin response factor 16 (ARF16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077992.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A3Q7H3N80.0A0A3Q7H3N8_SOLLC; Auxin response factor
STRINGSolyc06g075150.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]