PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g031240.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 327aa MW: 35741.4 Da PI: 6.9817

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g031240.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	138	160	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Sopen06g031240.1 138 YECKTCNRTFPSFQALGGHRTSH 160 99*********999998888777 PP
2	zf-C2H2	13.6	0.0002	222	244	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Sopen06g031240.1 222 HECSICGAEFSSGQALGGHMRRH 244 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	8.1E-13	137	162	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.49E-8	137	160	No hit	No description
SMART	SM00355	0.059	138	160	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.408	138	165	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	140	160	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	6.49E-8	217	244	No hit	No description
PROSITE profile	PS50157	9.743	222	244	IPR007087	Zinc finger, C2H2
Pfam	PF13912	8.5E-13	222	246	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	222	244	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	224	244	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MEFSEDSIDR TLVFKGKRSK RPRQFMAVAM VTSTSSTAVA DGGAGGGGGS GGDGGEDVCN 60 YSSSMQYSSS TTSTTQISTT SSTEEDEDMA NCLILLAQSG RCQKLQVEST ERKMVKISSR 120 KFTEMATTTP GKAGFYVYEC KTCNRTFPSF QALGGHRTSH KKIKTEEKKS TADSVSPSID 180 HHHQQQQQEE KINRIVTAST QIVNKGNSNL HSNLINKQPK IHECSICGAE FSSGQALGGH 240 MRRHRPPTIT ATNTKITVDE TSNNTSDNLS HDDDQNSKKP KLFLSLDLNL PASPEDDHHR 300 DDNNNFEFSA NQQSLLFSAA ALVDCHY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015077652.1	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A3Q7H0N2	0.0	A0A3Q7H0N2_SOLLC; Uncharacterized protein
STRING	Solyc06g074800.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	4e-51	C2H2 family protein