PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g030580.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 310aa    MW: 34595.9 Da    PI: 4.6505
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g030580.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.67.4e-16231041398
                       TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          l +p +f+++  g ++  s  l +e +  rsW+v +  +k  + +++++GW +Fv++n+L+  D + F + g+s+f   vk++ 
  Sopen06g030580.1  23 YLKLKIPSRFLKNLnGDIPVIS-LLEVEGSARRSWRVVI--EKIEEDFYFKGGWTKFVQDNNLENEDYLNFLYAGNSTF--SVKIYG 104
                       44589******77687777776.999999999*******..**********************************9999..888776 PP
2B358.11.6e-18157250399
                       EE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                B3   3 kvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        + ++ +++++ +l lp +f +++   g++   + ++   +++g+sW v +   ++s+r  l+kGW+++ ++n+L +gD++ Fkl+++++f l
  Sopen06g030580.1 157 EIVMKRSNFSKMLLNLPSTFGKKYmkrGHV--FE-KMATLQTDGKSWPVVV---RSSDRLKLRKGWRQYLQDNDLHVGDVLRFKLIDEENFIL 243
                       566789999999************754433..44.5666677*********...8999*****************************9***** PP

                       EEEEE-S CS
                B3  93 vvkvfrk 99 
                       +v ++r+
  Sopen06g030580.1 244 KVLIRRN 250
                       ****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-198107IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-1811107IPR015300DNA-binding pseudobarrel domain
CDDcd100175.37E-1111103No hitNo description
SMARTSM010192.3E-1213106IPR003340B3 DNA binding domain
PfamPF023624.0E-1425104IPR003340B3 DNA binding domain
PROSITE profilePS5086311.58926106IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-17154250IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.8E-17155249IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.943155251IPR003340B3 DNA binding domain
CDDcd100175.13E-16155249No hitNo description
SMARTSM010191.7E-13156251IPR003340B3 DNA binding domain
PfamPF023623.2E-16157250IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MERNYVGNGF PAFIKVYSPE TCYLKLKIPS RFLKNLNGDI PVISLLEVEG SARRSWRVVI  60
EKIEEDFYFK GGWTKFVQDN NLENEDYLNF LYAGNSTFSV KIYGKNGYLK QELNAIAELE  120
LHPLDEENPN EIQVVSPLAD EELDGSENSL VSVTLFEIVM KRSNFSKMLL NLPSTFGKKY  180
MKRGHVFEKM ATLQTDGKSW PVVVRSSDRL KLRKGWRQYL QDNDLHVGDV LRFKLIDEEN  240
FILKVLIRRN PSEEGDGDGD MLGGEGDPDG AGSGSGDDGG SIDGNGDGDG GGKQIQQLFS  300
GGVVSALAYL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-175HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077978.10.0B3 domain-containing transcription factor VRN1-like isoform X2
TrEMBLA0A3Q7GZQ71e-174A0A3Q7GZQ7_SOLLC; Uncharacterized protein
STRINGSolyc06g074160.1.11e-177(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126331320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.16e-13B3 family protein