PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g030050.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 502aa    MW: 54989.2 Da    PI: 5.7925
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g030050.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.2e-183784148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT  Ed +lv++v+++G g+W+++ ++ g+ R++k+c++rw ++l
  Sopen06g030050.1 37 KGPWTSAEDAILVEYVTKHGEGNWNAVQKHSGLARCGKSCRLRWANHL 84
                      79******************************************9986 PP
2Myb_DNA-binding49.41.1e-1590133146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +g++T+eE+  ++++++++G++ W++ a++++ gRt++++k++w++
  Sopen06g030050.1  90 KGAFTPEEERHIIELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 133
                       799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9393284IPR017930Myb domain
SuperFamilySSF466892.73E-3034131IPR009057Homeodomain-like
SMARTSM007171.7E-133686IPR001005SANT/Myb domain
PfamPF002493.7E-153784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-243891IPR009057Homeodomain-like
CDDcd001674.53E-113984No hitNo description
PROSITE profilePS5129425.18485139IPR017930Myb domain
SMARTSM007173.6E-1589137IPR001005SANT/Myb domain
PfamPF002497.5E-1590133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2592138IPR009057Homeodomain-like
CDDcd001674.03E-1192133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MTSESDDRMT SQDGVDSPSA EEACGGGNTG GGLPLKKGPW TSAEDAILVE YVTKHGEGNW  60
NAVQKHSGLA RCGKSCRLRW ANHLRPDLKK GAFTPEEERH IIELHAKMGN KWARMAAELP  120
GRTDNEIKNY WNTRIKRRQR AGLPIYPSDI CFQSITENKQ NEELGTFSSA DSQYPDFLPM  180
NFEIPAVEFK RLEFNQHLCP PALLNIPTGG ILDIPGRSLL AQGLNSAYYS RSFLSTTPPA  240
KRIRGSESLF SVLNGDCSPS KNDVSFPTCH QHQDDGSLLA QSMGFSSSFN QNLTSDYHPS  300
SLGVIPGSHA LLNGHTSSSE PSWAKKLELP SLQSPIASWG LVTSPLPSLD SVDTLIQSPP  360
TEHTESCNLS PRNSGLLDAV LHESQTMKAS KSILHQENSG DVVDNSCPDL HMTEWGQHGD  420
PISPLGHSAA SVFSEYTPTS GSSSEEPQLV TMPACKVKQE KFDYGPYDGK DDASNLICPR  480
PDFLLESNCF GHMQNTVRSI WY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32321381107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00348DAPTransfer from AT3G11440Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1754750.0EF175475.1 Solanum lycopersicum GAMYB-like2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077828.10.0transcription factor GAMYB-like isoform X1
SwissprotA2WW871e-98GAM1_ORYSI; Transcription factor GAMYB
TrEMBLA0A3Q7H2U60.0A0A3Q7H2U6_SOLLC; Uncharacterized protein
STRINGSolyc06g073640.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20212358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.12e-81myb domain protein 65