PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g029580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | FAR1 | ||||||||
Protein Properties | Length: 160aa MW: 18588.5 Da PI: 11.1357 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 49.3 | 1.6e-15 | 2 | 79 | 10 | 90 |
FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +GF +r+ +s+ks+r+g+i++r + C +++ + +++r r gC+a++ vk+ek g+w+v k++ +HnH+l+ Sopen06g029580.1 2 TGFITRVLSSRKSERDGSIISRGLGCRGIPDNQRPVSL---VNQKRDRRRDGCTAMILVKREKPGTWVVRKFVRDHNHPLV 79 7*************************876666666555...778888999*****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-13 | 2 | 79 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MTGFITRVLS SRKSERDGSI ISRGLGCRGI PDNQRPVSLV NQKRDRRRDG CTAMILVKRE 60 KPGTWVVRKF VRDHNHPLVM PPSKRRPTPD EKDKRIQELT TELRTKKRLT AAYREQLLSL 120 MKDVESHNEH LSTKVQAVQS ILKELEAKRQ ELSDHIVHHK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 1e-148 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015077863.1 | 1e-115 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
Refseq | XP_027773309.1 | 1e-115 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A3Q7HVF2 | 1e-103 | A0A3Q7HVF2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g073210.2.1 | 1e-108 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13099 | 17 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-35 | FAR1 family protein |