PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g029400.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 594aa    MW: 65743.3 Da    PI: 4.8163
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g029400.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1652.8e-51191471128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       lp G+rF+Ptdeel+++yL+ k++g + ++  vi+e+di+k+ePwdLp  + v+++++ew++F++ d+ky++g+r nrat++gyWkatgkd++
  Sopen06g029400.1  19 LPIGYRFRPTDEELINHYLCLKINGCHDQV-GVIREIDICKFEPWDLPdlSVVESNDNEWFYFCPIDRKYQNGQRLNRATERGYWKATGKDRN 110
                       699************************999.99**************96448888999*********************************** PP

               NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + ++kg+++g+kktLv+y+grap+g++t+Wv+heyr+
  Sopen06g029400.1 111 IATRKGAKIGMKKTLVYYNGRAPEGKRTNWVIHEYRA 147
                       ***********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5714170IPR003441NAC domain
PROSITE profilePS5100553.78719170IPR003441NAC domain
PfamPF023652.3E-2420146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MTVTPVGNQV VEVPPLNTLP IGYRFRPTDE ELINHYLCLK INGCHDQVGV IREIDICKFE  60
PWDLPDLSVV ESNDNEWFYF CPIDRKYQNG QRLNRATERG YWKATGKDRN IATRKGAKIG  120
MKKTLVYYNG RAPEGKRTNW VIHEYRATDK SLDGSRPGQG AFVLCRLFKK NELKQDENVE  180
SSHFDEVEHL VSSPAVGISP TDDGLSALAL SPIMESESNK SNPPKTSGCK THDTRLSIDS  240
CGNSCTAGDG EDLMVDITSG QPDLQIEELL GLFRDPSPEP IDWSPLHSQS QVEFGSSISH  300
GTMSNEINCD QKDVQCQNGI NDLNTNEFLN SILVSSDEFS YEDSEKELRS MWFASNSINT  360
ITTAPVTDSG TCSVLKSQVT QEPVRRDIFE PELLLGNCGE TALMREVNSV ATTVDDVFAT  420
PYVRNDHSMG NVGTDSAFGI TLRTRRTQNQ PDNSQLGSGM QGTTVRRIRY QVKLQAGRVE  480
RRMPTDSDQG GANHEGLSAV SESEKFSNED SSSLSAAISS DVTQDTMCKE FEGDRQMAED  540
LSANVKDRNG LKRAALSSFS FSFYISKVFA VASLLIVFLG VCGCFKLRQS ASKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-46101759173NAC domain-containing protein 19
3swm_B4e-46101759173NAC domain-containing protein 19
3swm_C4e-46101759173NAC domain-containing protein 19
3swm_D4e-46101759173NAC domain-containing protein 19
3swp_A4e-46101759173NAC domain-containing protein 19
3swp_B4e-46101759173NAC domain-containing protein 19
3swp_C4e-46101759173NAC domain-containing protein 19
3swp_D4e-46101759173NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0135210.0BT013521.1 Lycopersicon esculentum clone 132239F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077174.10.0NAC domain-containing protein 91
TrEMBLA0A3Q7HVC40.0A0A3Q7HVC4_SOLLC; Uncharacterized protein
STRINGSolyc06g073050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.13e-85NAC domain containing protein 62