PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g028680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 712aa MW: 78298 Da PI: 6.5087 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 30 | 81 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++t++q++ Le++F+++++p+++ r +L++ lgL rq+k+WFqNrR++ k Sopen06g028680.1 30 HRHTAHQIQSLESVFKECPHPDEKIRLQLSRDLGLAPRQIKFWFQNRRTQLK 81 689*********************************************9987 PP | |||||||
2 | START | 171.3 | 6.4e-54 | 223 | 448 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 +a a++el+++ + +ep+W+ks + ++ d++ q+f+++++ ++ea+r sgvv+m+ lv ++d++ +W e ++ ka Sopen06g028680.1 223 IAGNAMEELIRLLQTNEPLWTKSTtdgrDVLDIDKYGQIFPKANSslknpnVRVEASRQSGVVIMNGLALVDMFMDVN-KWVEFFPtivsKAR 314 67899**********************99***********99999*********************************.************** PP EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166 tlevis g ++lqlm+ae q+lsplvp R +f+R+++q + g+w+ivdvS d +q++ +s+ ++++lpSg+li++++ng+skvtw Sopen06g028680.1 315 TLEVISCGmmgsrsSTLQLMYAEQQVLSPLVPtRQLYFLRFCQQIETGSWAIVDVSYDITQENMYPPSSCKVHKLPSGCLIQDMPNGYSKVTW 407 *************************************************************998899************************** PP EE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 167 vehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 +ehv+++++ h l+r l+ sg+a+ga +w+ lqr+ce+ Sopen06g028680.1 408 LEHVEVEEKGSiHRLYRDLIFSGMAFGAERWLGSLQRLCER 448 ******998666***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-20 | 12 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.5E-18 | 12 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.167 | 23 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-18 | 24 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.91E-17 | 25 | 84 | No hit | No description |
Pfam | PF00046 | 2.8E-16 | 30 | 81 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 58 | 81 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 48.053 | 213 | 451 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.24E-35 | 214 | 450 | No hit | No description |
CDD | cd08875 | 4.64E-112 | 217 | 447 | No hit | No description |
SMART | SM00234 | 2.0E-43 | 222 | 448 | IPR002913 | START domain |
Pfam | PF01852 | 8.3E-46 | 223 | 448 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 4.4E-5 | 228 | 258 | IPR023393 | START-like domain |
Gene3D | G3DSA:3.30.530.20 | 4.4E-5 | 331 | 421 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.37E-20 | 469 | 678 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 712 aa Download sequence Send to blast |
MEYGGGGGGG ASSSGGGEAT DASRKKKRFH RHTAHQIQSL ESVFKECPHP DEKIRLQLSR 60 DLGLAPRQIK FWFQNRRTQL KSQHERADNS ALRSENDRIR CENIAIREAI KNVICPSCGG 120 PPVTEDTYFD EQKLRMENLQ LKEELDKISS IAAKYMGRPI SQLPPVQPVH LSSLNLMSMP 180 NFGLTGPSLD LDLLPGSSTS TFPNLPCPTF NISDMDKSLM ADIAGNAMEE LIRLLQTNEP 240 LWTKSTTDGR DVLDIDKYGQ IFPKANSSLK NPNVRVEASR QSGVVIMNGL ALVDMFMDVN 300 KWVEFFPTIV SKARTLEVIS CGMMGSRSST LQLMYAEQQV LSPLVPTRQL YFLRFCQQIE 360 TGSWAIVDVS YDITQENMYP PSSCKVHKLP SGCLIQDMPN GYSKVTWLEH VEVEEKGSIH 420 RLYRDLIFSG MAFGAERWLG SLQRLCERYA CLMVSGNSSR ELGGVIQSPE GKKSMMKVAE 480 RMVSSFCASI NPSNGHQWNN ISTLDEFEVR ATLQKCTDPG QPNGVVISAA STIWLPVPPQ 540 HVFNFLRDER TRPQWDVLSN QNPVQEVAHI ANGSHPGNSI SVLRAYNTSQ NNMLILQESC 600 IDSSGSLVVY SPVDLQSINI AMSGEDTTYI PLLPSGFTIS PDGRGSDEAL SMNNGSTMGA 660 GGGGSLVTVV FQILVSSLSS SAKMSPESVN TVNNLIGNTI HQIKAALNCS TS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015077748.1 | 0.0 | homeobox-leucine zipper protein HDG11-like | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A3Q7H1K2 | 0.0 | A0A3Q7H1K2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g072310.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2490 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |