PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen06g028330.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YC

Protein Properties

Length: 186aa MW: 20515.3 Da PI: 4.8184

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen06g028330.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	174.9	8.3e-55	1	102	4	102
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 +fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflv Sopen06g028330.1 1 MFWTYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLV 93 6999887789********************************************************************************* PP NF-YC 94 divprdelk 102 divprde+k Sopen06g028330.1 94 DIVPRDEIK 102 ****975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.88E-33	6	92	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.9E-37	12	84	IPR009072	Histone-fold
Pfam	PF00808	5.2E-21	20	83	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MFWTYQRQEI EQVNDFKNHQ LPLARIKKIM KADEDVRMIS AEAPVLFAKA CELFILELTI 60 RSWLHAEENK RRTLQKNDIA AAITRTDIFD FLVDIVPRDE IKDEGVGLGP GIVGSTASGV 120 PYYYPPMGQP APGGVMLGRP AVPGVDPSMY VHPPPSQAWQ SVWQTGDDNS YASGGSSGQG 180 NLDGQI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	4e-55	6	98	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	76	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	0.0	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234244.1	1e-138	CONSTANS interacting protein 2a
Refseq	XP_015079848.1	1e-138	nuclear transcription factor Y subunit C-1-like
Swissprot	Q9SMP0	1e-100	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	Q2VY18	1e-137	Q2VY18_SOLLC; CONSTANS interacting protein 2a
STRING	Solyc06g072040.1.1	1e-137	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4087	21	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-103	nuclear factor Y, subunit C1

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]