PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g028000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 320aa    MW: 36870.2 Da    PI: 7.404
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g028000.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.27e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
  Sopen06g028000.1 14 KGLWSPEEDEKLYNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                      678*******************************************97 PP

2Myb_DNA-binding47.63.8e-1567111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg +++eE++ ++ ++k lG++ W+ Ia++++ gRt++++k++w++ 
  Sopen06g028000.1  67 RGMFSQEEEDMIITLHKVLGNR-WAQIAAKLP-GRTDNEIKNFWNSN 111
                       788*******************.*********.***********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.25961IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-23964IPR009057Homeodomain-like
SMARTSM007174.7E-121363IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-2913108IPR009057Homeodomain-like
PfamPF002498.5E-151461IPR001005SANT/Myb domain
CDDcd001672.25E-101761No hitNo description
PROSITE profilePS5129424.43862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2565116IPR009057Homeodomain-like
SMARTSM007177.6E-1566114IPR001005SANT/Myb domain
PfamPF002499.6E-1467111IPR001005SANT/Myb domain
CDDcd001674.77E-1170112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRHSVFVKE KTRKGLWSPE EDEKLYNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQEEEDMIIT LHKVLGNRWA QIAAKLPGRT DNEIKNFWNS NLKRKLTKQG  120
IDPNTHKPLS ENHQGRNETN CTDKTSSLLM PKLPNMSNSA EIEQPFHFNS KRNFNGEAIT  180
RELTEVSKKQ LVSKQVFDPL FLYEFQANVN PIEPYAHHHN QTEGNQDFGF CSNFQHGHMT  240
TESDISDSST SRMSTSNSSN TMISHYSSVG IQMNEMLEWD ADNKIDSLIQ YPYVGIKNEE  300
NYSNNNNTLS GENLDVFHHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078703.10.0transcription factor MYB86-like
TrEMBLA0A3Q7GZ070.0A0A3Q7GZ07_SOLLC; Uncharacterized protein
STRINGSolyc06g071690.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.18e-76myb domain protein 86