PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g027970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 169aa MW: 18902.3 Da PI: 7.2896 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.5 | 2.3e-43 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC ++C++ap+fp e+p+kfanvhk+FGasnv+kll+++ +++reda+++l+yeAear+rdPvyG+v+ i+ lq+q+e+l++e Sopen06g027970.1 10 PCAACKFLRRKCLPGCIFAPHFPPEEPHKFANVHKIFGASNVTKLLNEVLPHQREDAVNTLAYEAEARVRDPVYGCVSAITFLQRQVERLEKE 102 7******************************************************************************************** PP DUF260 94 lallke 99 l+++k+ Sopen06g027970.1 103 LDSAKA 108 *99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.04 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-42 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MASSSCYNSP CAACKFLRRK CLPGCIFAPH FPPEEPHKFA NVHKIFGASN VTKLLNEVLP 60 HQREDAVNTL AYEAEARVRD PVYGCVSAIT FLQRQVERLE KELDSAKADL MRYASNDMSQ 120 PLIGTHHHEG ENIGSTLHNM AMSRRMGYDH HGGGNYFPWN DQNNSGGNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-63 | 8 | 118 | 9 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-63 | 8 | 118 | 9 | 119 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015078870.1 | 1e-127 | protein LATERAL ORGAN BOUNDARIES-like | ||||
Swissprot | Q9FML4 | 6e-69 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A3Q7HUK2 | 1e-123 | A0A3Q7HUK2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g071660.1.1 | 1e-124 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 2e-71 | LBD family protein |
Publications ? help Back to Top | |||
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